View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2605_high_29 (Length: 359)

Name: NF2605_high_29
Description: NF2605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2605_high_29
NF2605_high_29
[»] chr2 (22 HSPs)
chr2 (6-216)||(37092181-37092376)
chr2 (150-220)||(25423833-25423903)
chr2 (150-220)||(5394485-5394555)
chr2 (158-216)||(17981594-17981652)
chr2 (150-220)||(37179983-37180053)
chr2 (158-220)||(14551571-14551633)
chr2 (150-216)||(31579215-31579281)
chr2 (158-216)||(42745102-42745160)
chr2 (148-210)||(7020352-7020414)
chr2 (150-212)||(9438126-9438188)
chr2 (150-212)||(18105353-18105414)
chr2 (159-220)||(1682120-1682181)
chr2 (161-218)||(38372978-38373035)
chr2 (156-220)||(17655756-17655822)
chr2 (149-211)||(3562181-3562243)
chr2 (148-190)||(14121894-14121936)
chr2 (153-201)||(39401070-39401118)
chr2 (148-215)||(13835444-13835511)
chr2 (148-214)||(993840-993906)
chr2 (158-220)||(24412909-24412971)
chr2 (148-202)||(38743825-38743879)
chr2 (168-213)||(12233064-12233109)
[»] chr5 (13 HSPs)
chr5 (156-341)||(31113429-31113614)
chr5 (150-215)||(5123485-5123550)
chr5 (150-220)||(10592016-10592086)
chr5 (158-216)||(22187984-22188042)
chr5 (150-214)||(30784974-30785038)
chr5 (148-216)||(25983752-25983820)
chr5 (149-220)||(373746-373817)
chr5 (153-215)||(29553631-29553693)
chr5 (149-198)||(36212984-36213033)
chr5 (168-202)||(22402074-22402108)
chr5 (176-213)||(12682750-12682787)
chr5 (153-220)||(5051681-5051749)
chr5 (156-200)||(18244679-18244723)
[»] chr8 (16 HSPs)
chr8 (150-220)||(4125006-4125076)
chr8 (153-216)||(2744025-2744088)
chr8 (150-216)||(7839239-7839305)
chr8 (148-214)||(19715713-19715780)
chr8 (156-210)||(12958077-12958131)
chr8 (150-216)||(13468731-13468797)
chr8 (150-216)||(30936093-30936159)
chr8 (164-214)||(39086855-39086905)
chr8 (156-220)||(8521793-8521856)
chr8 (150-212)||(30055991-30056053)
chr8 (156-200)||(36994502-36994546)
chr8 (148-215)||(24988586-24988653)
chr8 (149-220)||(40320184-40320255)
chr8 (152-214)||(13005666-13005728)
chr8 (150-191)||(15683018-15683059)
chr8 (149-220)||(16700578-16700650)
[»] chr4 (22 HSPs)
chr4 (148-220)||(9012357-9012429)
chr4 (150-216)||(31307052-31307118)
chr4 (150-220)||(38766178-38766248)
chr4 (150-220)||(51626288-51626358)
chr4 (148-216)||(14854692-14854760)
chr4 (150-220)||(46016238-46016308)
chr4 (148-213)||(33529344-33529409)
chr4 (149-214)||(35972431-35972496)
chr4 (148-214)||(15133462-15133528)
chr4 (151-212)||(35334088-35334149)
chr4 (11-95)||(17345557-17345641)
chr4 (11-93)||(17138878-17138960)
chr4 (152-207)||(13948587-13948642)
chr4 (156-215)||(45994617-45994676)
chr4 (149-200)||(13686690-13686741)
chr4 (150-212)||(46250545-46250607)
chr4 (149-205)||(25768685-25768741)
chr4 (184-220)||(37241358-37241394)
chr4 (149-214)||(18841573-18841639)
chr4 (149-203)||(36990093-36990147)
chr4 (171-216)||(32005132-32005177)
chr4 (149-193)||(51853784-51853828)
[»] chr1 (19 HSPs)
chr1 (150-214)||(42297430-42297494)
chr1 (149-220)||(15642543-15642614)
chr1 (157-220)||(16756178-16756241)
chr1 (166-220)||(18428124-18428178)
chr1 (150-216)||(28724761-28724827)
chr1 (150-216)||(36806700-36806766)
chr1 (150-220)||(49071666-49071736)
chr1 (151-215)||(9780976-9781040)
chr1 (148-220)||(46864178-46864250)
chr1 (156-215)||(22022215-22022274)
chr1 (150-220)||(12035639-12035709)
chr1 (148-214)||(44913196-44913262)
chr1 (156-220)||(10367599-10367663)
chr1 (148-220)||(10750684-10750756)
chr1 (175-214)||(7242795-7242834)
chr1 (157-205)||(6607691-6607739)
chr1 (163-214)||(32534184-32534235)
chr1 (158-220)||(2044494-2044556)
chr1 (158-211)||(39547355-39547408)
[»] chr7 (26 HSPs)
chr7 (150-216)||(29059894-29059960)
chr7 (150-216)||(31492192-31492258)
chr7 (158-220)||(37339715-37339777)
chr7 (158-215)||(28665187-28665244)
chr7 (156-214)||(21747028-21747086)
chr7 (148-216)||(11486730-11486798)
chr7 (148-203)||(19477249-19477303)
chr7 (156-214)||(31776513-31776571)
chr7 (148-213)||(20207584-20207649)
chr7 (148-216)||(24172296-24172364)
chr7 (156-216)||(35707941-35708001)
chr7 (156-220)||(42741791-42741854)
chr7 (149-202)||(29428792-29428845)
chr7 (169-213)||(36821069-36821113)
chr7 (148-212)||(32470003-32470069)
chr7 (148-220)||(46373760-46373834)
chr7 (150-188)||(14545032-14545070)
chr7 (153-211)||(28828756-28828814)
chr7 (155-220)||(3231313-3231378)
chr7 (150-216)||(28537479-28537541)
chr7 (153-214)||(45778956-45779017)
chr7 (157-204)||(1424669-1424716)
chr7 (165-220)||(8839262-8839318)
chr7 (183-216)||(14552482-14552515)
chr7 (150-186)||(13254117-13254153)
chr7 (148-216)||(33299166-33299234)
[»] chr3 (20 HSPs)
chr3 (158-216)||(8757441-8757499)
chr3 (148-220)||(38331215-38331287)
chr3 (148-220)||(48204293-48204365)
chr3 (150-212)||(27763810-27763872)
chr3 (150-212)||(30995955-30996017)
chr3 (152-220)||(1642697-1642765)
chr3 (148-216)||(25224786-25224854)
chr3 (156-220)||(55123192-55123256)
chr3 (150-215)||(20861337-20861402)
chr3 (169-216)||(40318435-40318482)
chr3 (157-220)||(39950308-39950371)
chr3 (149-212)||(44941255-44941317)
chr3 (148-219)||(48210943-48211014)
chr3 (148-220)||(40294699-40294771)
chr3 (171-219)||(43621294-43621342)
chr3 (149-220)||(15283159-15283230)
chr3 (149-192)||(15446084-15446127)
chr3 (148-220)||(11767197-11767269)
chr3 (148-216)||(22288322-22288390)
chr3 (149-213)||(46725513-46725576)
[»] scaffold0013 (1 HSPs)
scaffold0013 (157-220)||(29134-29197)
[»] scaffold0182 (1 HSPs)
scaffold0182 (150-216)||(26420-26486)
[»] chr6 (14 HSPs)
chr6 (151-216)||(12836883-12836948)
chr6 (153-215)||(28099335-28099397)
chr6 (152-212)||(9536858-9536918)
chr6 (150-216)||(12411237-12411303)
chr6 (150-220)||(31412211-31412281)
chr6 (157-214)||(21910301-21910357)
chr6 (149-220)||(278479-278550)
chr6 (150-188)||(423744-423782)
chr6 (149-199)||(21028845-21028895)
chr6 (149-199)||(21028982-21029032)
chr6 (149-200)||(28933226-28933277)
chr6 (156-220)||(1534347-1534409)
chr6 (148-201)||(6062129-6062182)
chr6 (158-215)||(15614560-15614617)
[»] scaffold0009 (1 HSPs)
scaffold0009 (148-215)||(27212-27279)
[»] scaffold0071 (1 HSPs)
scaffold0071 (149-192)||(16065-16108)


Alignment Details
Target: chr2 (Bit Score: 145; Significance: 3e-76; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 6 - 216
Target Start/End: Complemental strand, 37092376 - 37092181
Alignment:
Q  6 aggagcacagattgaatctgtcactaatgataacttgattgttagtgttttcaatagcttggatcaacctttccttatttcttggttagtttactctctc 105  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37092376 aggaccacagattgaatctgtcactaatgataacttgattgttagtgttttcaatagcttggatcaacctttccttatttcttggttagtttactctctc 37092277  T
Q  106 ttctaactttcttgtttagnnnnnnnnnnnnnaaagtatcatcttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcg 205  Q
    |||||||||||||||||               |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||    
T  37092276 ttctaactttcttgttt---------------aaagtatcatcttgccgtccatttgggtcccacagtgctcgagggattagtctccgcagttgtgcacg 37092192  T

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Target: chr2; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 150 - 220
Target Start/End: Original strand, 25423833 - 25423903
Alignment:
Q  150 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccgattt 220  Q
    ||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  25423833 tgccgcccatttgggtcccacaatgctcgagggattagtctcagcagttgcgcgtggaggatacccgattt 25423903  T

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Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 150 - 220
Target Start/End: Original strand, 5394485 - 5394555
Alignment:
Q  150 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccgattt 220  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||||    
T  5394485 tgccgcccatttgggtcccacaatgctcgtgggattagtctccgcagttgcacgcggaggatactcgattt 5394555  T

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Target: chr2; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 158 - 216
Target Start/End: Original strand, 17981594 - 17981652
Alignment:
Q  158 atttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccg 216  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  17981594 atttgggtcccacaatgctcgagagattagtctccgcagttgcgcgcggaggatacccg 17981652  T

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Target: chr2; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 150 - 220
Target Start/End: Complemental strand, 37180053 - 37179983
Alignment:
Q  150 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccgattt 220  Q
    ||||| ||||||| |||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||    
T  37180053 tgccgcccatttgagtcccacaatactcgagggattagtctacgcacttgcgcgcggaggatacccgattt 37179983  T

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Target: chr2; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 158 - 220
Target Start/End: Original strand, 14551571 - 14551633
Alignment:
Q  158 atttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccgattt 220  Q
    |||||||||| |||||||||||||||||| ||||||||||||||||| |||||||| ||||||    
T  14551571 atttgggtcctacaatgctcgagggattaatctccgcagttgcgcgcagaggatactcgattt 14551633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 150 - 216
Target Start/End: Complemental strand, 31579281 - 31579215
Alignment:
Q  150 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccg 216  Q
    ||||| ||||||  |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  31579281 tgccgcccatttaagtcccacaatgctcgaggaattagtttccgcagttgcgcgcggaggatacccg 31579215  T

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Target: chr2; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 158 - 216
Target Start/End: Complemental strand, 42745160 - 42745102
Alignment:
Q  158 atttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccg 216  Q
    |||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  42745160 atttgggttccacaatggtcgagggattagtctcagcagttgcgcgcggaggatacccg 42745102  T

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Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 148 - 210
Target Start/End: Complemental strand, 7020414 - 7020352
Alignment:
Q  148 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggagga 210  Q
    ||||||| |||||||||||| |||||||||||| ||||||||||  |||||||||||||||||    
T  7020414 cttgccgcccatttgggtcctacaatgctcgagtgattagtctcgacagttgcgcgcggagga 7020352  T

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Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 150 - 212
Target Start/End: Complemental strand, 9438188 - 9438126
Alignment:
Q  150 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggata 212  Q
    ||||| ||||||| ||||||||||||| ||||||||||| ||| |||||||||||||||||||    
T  9438188 tgccgcccatttgtgtcccacaatgcttgagggattagtttccacagttgcgcgcggaggata 9438126  T

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Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 150 - 212
Target Start/End: Complemental strand, 18105414 - 18105353
Alignment:
Q  150 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggata 212  Q
    ||||| ||||||| ||| |||||| |||||||||||||||| |||||||||||||||||||||    
T  18105414 tgccgcccatttgagtctcacaatactcgagggattagtct-cgcagttgcgcgcggaggata 18105353  T

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Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 220
Target Start/End: Original strand, 1682120 - 1682181
Alignment:
Q  159 tttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccgattt 220  Q
    ||||||||| | ||| |||||||||||||||||||||||||||| | |||||||||| ||||    
T  1682120 tttgggtcctataatactcgagggattagtctccgcagttgcgcacagaggatacccaattt 1682181  T

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Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 218
Target Start/End: Complemental strand, 38373035 - 38372978
Alignment:
Q  161 tgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccgat 218  Q
    ||||||||||||||||| ||| ||||||||   |||||||||||||||||||||||||    
T  38373035 tgggtcccacaatgctcaaggaattagtctatacagttgcgcgcggaggatacccgat 38372978  T

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Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 220
Target Start/End: Original strand, 17655756 - 17655822
Alignment:
Q  156 ccatttgggtcccacaatgctcgagggattagtctccgcagttgc--gcgcggaggatacccgattt 220  Q
    |||||||| | |||||| |||||||||||||||||||||||||||  ||| |||||||||| |||||    
T  17655756 ccatttggattccacaaggctcgagggattagtctccgcagttgcgtgcgaggaggatacctgattt 17655822  T

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Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 211
Target Start/End: Complemental strand, 3562243 - 3562181
Alignment:
Q  149 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggat 211  Q
    |||||| ||||||||||||||||| ||| |||| | |||||| ||||||||||||||| ||||    
T  3562243 ttgccgcccatttgggtcccacaaagcttgaggtactagtcttcgcagttgcgcgcggcggat 3562181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 148 - 190
Target Start/End: Complemental strand, 14121936 - 14121894
Alignment:
Q  148 cttgccgtccatttgggtcccacaatgctcgagggattagtct 190  Q
    ||||||| ||||||| |||||||||||||||||||||||||||    
T  14121936 cttgccgcccatttgagtcccacaatgctcgagggattagtct 14121894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 201
Target Start/End: Complemental strand, 39401118 - 39401070
Alignment:
Q  153 cgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcg 201  Q
    ||||||||| |||||||||||||||| | |||||| |||||||||||||    
T  39401118 cgtccatttaggtcccacaatgctcgtgagattagactccgcagttgcg 39401070  T

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Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 148 - 215
Target Start/End: Complemental strand, 13835511 - 13835444
Alignment:
Q  148 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggataccc 215  Q
    |||||||| |||||| ||||||||||| | ||||||||||| || ||||||| | | |||||||||||    
T  13835511 cttgccgttcatttgagtcccacaatgtttgagggattagtttctgcagttgtgtgtggaggataccc 13835444  T

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Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 214
Target Start/End: Original strand, 993840 - 993906
Alignment:
Q  148 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 214  Q
    ||||||| |||||||||||| ||||| ||  | |||||||| ||||| |||||||| ||||||||||    
T  993840 cttgccgcccatttgggtcctacaatactgaatggattagtttccgccgttgcgcgtggaggatacc 993906  T

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Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 220
Target Start/End: Complemental strand, 24412971 - 24412909
Alignment:
Q  158 atttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccgattt 220  Q
    ||||| |||||||||| || |||| |||||||||||||||| |||  ||||||||||| ||||    
T  24412971 atttgagtcccacaatacttgaggaattagtctccgcagttccgctaggaggatacccaattt 24412909  T

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Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 202
Target Start/End: Original strand, 38743825 - 38743879
Alignment:
Q  148 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgc 202  Q
    |||||||  ||||||| || |||||||||  ||||||||||||||||||||||||    
T  38743825 cttgccgctcatttggatctcacaatgctttagggattagtctccgcagttgcgc 38743879  T

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Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 213
Target Start/End: Complemental strand, 12233109 - 12233064
Alignment:
Q  168 cacaatgctcgagggattagtctccgcagttgcgcgcggaggatac 213  Q
    ||||||||||||||||||||||||| ||||| |||  |||||||||    
T  12233109 cacaatgctcgagggattagtctccacagttacgcttggaggatac 12233064  T

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Target: chr5 (Bit Score: 129; Significance: 1e-66; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 156 - 341
Target Start/End: Original strand, 31113429 - 31113614
Alignment:
Q  156 ccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccgatttnnnnnnnnnnnnnnngtctgaaagtatttacaagg 255  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||               ||||||||||||||||||||    
T  31113429 ccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcgaaggatacccgatttacacaaaaaaaaaaagtctgaaagtatttacaagg 31113528  T
Q  256 ctaccggaaaactaccaaacagcaacaaaatcattattcacatccatagttttgaaaactgattcggtgatcgactcggtaaaggt 341  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31113529 ctaccggaaaactaccaaacagcaacaaaatcattattcacatccatagttttgaaaactgattcggtgatcgactcggtaaaggt 31113614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 150 - 215
Target Start/End: Complemental strand, 5123550 - 5123485
Alignment:
Q  150 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggataccc 215  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5123550 tgccgcccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggataccc 5123485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 150 - 220
Target Start/End: Original strand, 10592016 - 10592086
Alignment:
Q  150 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccgattt 220  Q
    ||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  10592016 tgccgcccatttgagtcccacaatgctcgagggattagtctctgcagttgcgcgcggaggatacccgattt 10592086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 158 - 216
Target Start/End: Complemental strand, 22188042 - 22187984
Alignment:
Q  158 atttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccg 216  Q
    |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  22188042 atttgggtcccacaatactagagggattagtctccgcagttgcgcgcggaggatacccg 22187984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 150 - 214
Target Start/End: Complemental strand, 30785038 - 30784974
Alignment:
Q  150 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 214  Q
    |||| ||||||| |||| ||||||| || ||||||||||||||||||||||||||||||||||||    
T  30785038 tgccatccatttaggtctcacaatgttcaagggattagtctccgcagttgcgcgcggaggatacc 30784974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 148 - 216
Target Start/End: Original strand, 25983752 - 25983820
Alignment:
Q  148 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccg 216  Q
    ||||||| ||||||| |||||| |||| ||||| ||||||||||||||||||| | |||||||||||||    
T  25983752 cttgccgcccatttgagtcccataatgttcgagtgattagtctccgcagttgcacacggaggatacccg 25983820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 149 - 220
Target Start/End: Complemental strand, 373817 - 373746
Alignment:
Q  149 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccgattt 220  Q
    |||||||| |||||||||  |||||| || |||||||| ||||||||||||||| |||||||||||| ||||    
T  373817 ttgccgtctatttgggtcatacaatgttcaagggattaatctccgcagttgcgcacggaggatacccaattt 373746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 153 - 215
Target Start/End: Original strand, 29553631 - 29553693
Alignment:
Q  153 cgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggataccc 215  Q
    ||||||||||||||||| ||||||| || |||||||||| ||||||| ||| |||||||||||    
T  29553631 cgtccatttgggtcccagaatgctcaagagattagtctctgcagttgtgcgtggaggataccc 29553693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 149 - 198
Target Start/End: Original strand, 36212984 - 36213033
Alignment:
Q  149 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagtt 198  Q
    |||||| |||||| ||||||||||||||||||||||| ||||||||||||    
T  36212984 ttgccgcccatttaggtcccacaatgctcgagggattggtctccgcagtt 36213033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 202
Target Start/End: Original strand, 22402074 - 22402108
Alignment:
Q  168 cacaatgctcgagggattagtctccgcagttgcgc 202  Q
    ||||||||||||||||||| |||||||||||||||    
T  22402074 cacaatgctcgagggattaatctccgcagttgcgc 22402108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 213
Target Start/End: Original strand, 12682750 - 12682787
Alignment:
Q  176 tcgagggattagtctccgcagttgcgcgcggaggatac 213  Q
    |||||| |||||||| ||||||||||||||||||||||    
T  12682750 tcgaggaattagtcttcgcagttgcgcgcggaggatac 12682787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 220
Target Start/End: Original strand, 5051681 - 5051749
Alignment:
Q  153 cgtccatttgggtcccacaatgctcgagggattagtctccgc-agttgcgcgcggaggatacccgattt 220  Q
    |||||||||| ||| ||||||||||||| ||||||| || || ||||||| || |||||| ||||||||    
T  5051681 cgtccatttgagtctcacaatgctcgagagattagtttctgcaagttgcgtgcagaggatgcccgattt 5051749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 200
Target Start/End: Original strand, 18244679 - 18244723
Alignment:
Q  156 ccatttgggtcccacaatgctcgagggattagtctccgcagttgc 200  Q
    |||||||||| ||||||| || ||| |||||||||||||||||||    
T  18244679 ccatttgggttccacaatacttgagagattagtctccgcagttgc 18244723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 150 - 220
Target Start/End: Complemental strand, 4125076 - 4125006
Alignment:
Q  150 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccgattt 220  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4125076 tgccgcccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccgattt 4125006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 153 - 216
Target Start/End: Original strand, 2744025 - 2744088
Alignment:
Q  153 cgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccg 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2744025 cgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccg 2744088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 150 - 216
Target Start/End: Complemental strand, 7839305 - 7839239
Alignment:
Q  150 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccg 216  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7839305 tgccgcccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccg 7839239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 148 - 214
Target Start/End: Complemental strand, 19715780 - 19715713
Alignment:
Q  148 cttgccgtccatttgggtcccacaatgctcgaggg-attagtctccgcagttgcgcgcggaggatacc 214  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  19715780 cttgccgcccatttgggtcccacaatgctcgaggggattagtctccgcagttgcgcgcggagaatacc 19715713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 12958131 - 12958077
Alignment:
Q  156 ccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggagga 210  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  12958131 ccatttgggtcccacaatgctcgagggattagtctccgcagtagcgcgcggagga 12958077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 150 - 216
Target Start/End: Complemental strand, 13468797 - 13468731
Alignment:
Q  150 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccg 216  Q
    ||||| ||||||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||    
T  13468797 tgccgcccatttgagtcccacaatgctcgaaggattagtctccgcagttgcgcacggaggatacccg 13468731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 150 - 216
Target Start/End: Original strand, 30936093 - 30936159
Alignment:
Q  150 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccg 216  Q
    ||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||| | ||||||    
T  30936093 tgccgcccatttgggtccgacaatgttcgagggattagtctccgcagttgcgcgcggatgttacccg 30936159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 164 - 214
Target Start/End: Original strand, 39086855 - 39086905
Alignment:
Q  164 gtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 214  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  39086855 gtcccacaatgctcgagggattagtctccgcagttgcacgcggaggatacc 39086905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 156 - 220
Target Start/End: Original strand, 8521793 - 8521856
Alignment:
Q  156 ccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccgattt 220  Q
    ||||||| ||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||    
T  8521793 ccatttgagtcccacaatgctcgagggattagtatcc-cagttgcgcgcggaagatacccgattt 8521856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 150 - 212
Target Start/End: Complemental strand, 30056053 - 30055991
Alignment:
Q  150 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggata 212  Q
    |||||||||||||||| |||||||||||||||||||||||||   ||||||| |||| |||||    
T  30056053 tgccgtccatttgggttccacaatgctcgagggattagtctctttagttgcgtgcgggggata 30055991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 156 - 200
Target Start/End: Complemental strand, 36994546 - 36994502
Alignment:
Q  156 ccatttgggtcccacaatgctcgagggattagtctccgcagttgc 200  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||    
T  36994546 ccatttgggtcccacaaggctcgagggattagtctctgcagttgc 36994502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 148 - 215
Target Start/End: Original strand, 24988586 - 24988653
Alignment:
Q  148 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggataccc 215  Q
    |||||||  |||||| |||||||||| ||||||||||||||||||||| ||||||   ||||||||||    
T  24988586 cttgccgctcatttgagtcccacaatactcgagggattagtctccgcaattgcgcattgaggataccc 24988653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 220
Target Start/End: Original strand, 40320184 - 40320255
Alignment:
Q  149 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccgattt 220  Q
    |||||||| |||||| |||||| ||||||||| |||||||||| | |||||  |||||||||||||| ||||    
T  40320184 ttgccgtctatttggatcccacgatgctcgagagattagtctctgtagttgtacgcggaggatacccaattt 40320255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 214
Target Start/End: Complemental strand, 13005728 - 13005666
Alignment:
Q  152 ccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 214  Q
    |||||||||| |||||||||| |||| || ||| |||||||||||||  ||||||| ||||||    
T  13005728 ccgtccatttaggtcccacaaggctcaagagatcagtctccgcagttctgcgcggaagatacc 13005666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 191
Target Start/End: Original strand, 15683018 - 15683059
Alignment:
Q  150 tgccgtccatttgggtcccacaatgctcgagggattagtctc 191  Q
    ||||| |||||| |||||||||||||||||||||||| ||||    
T  15683018 tgccgcccatttaggtcccacaatgctcgagggattaatctc 15683059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 220
Target Start/End: Complemental strand, 16700650 - 16700578
Alignment:
Q  149 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgca-gttgcgcgcggaggatacccgattt 220  Q
    ||||| |||||||  |||| |||| |||||||| |||||||||  || ||||||||||||||||||| |||||    
T  16700650 ttgccatccatttaagtccaacaaagctcgaggaattagtctctacaagttgcgcgcggaggatacctgattt 16700578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 148 - 220
Target Start/End: Original strand, 9012357 - 9012429
Alignment:
Q  148 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccgattt 220  Q
    ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9012357 cttgccgcccacttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccgattt 9012429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 150 - 216
Target Start/End: Complemental strand, 31307118 - 31307052
Alignment:
Q  150 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccg 216  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31307118 tgccgcccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccg 31307052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 150 - 220
Target Start/End: Original strand, 38766178 - 38766248
Alignment:
Q  150 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccgattt 220  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38766178 tgccgcccatttgggtctcacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccgattt 38766248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 150 - 220
Target Start/End: Complemental strand, 51626358 - 51626288
Alignment:
Q  150 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccgattt 220  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  51626358 tgccgtccatttgggtcccacagtgctcgagagattagtctccgcagttgcgcgcggaggatacccgattt 51626288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 148 - 216
Target Start/End: Original strand, 14854692 - 14854760
Alignment:
Q  148 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccg 216  Q
    ||||||| |||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  14854692 cttgccgcccatttgggtccaacaattctcgagggattagtctctgcagttgcgcgcggaggatacccg 14854760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 150 - 220
Target Start/End: Original strand, 46016238 - 46016308
Alignment:
Q  150 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccgattt 220  Q
    ||||| |||||||||||||||||||||||| | ||||||||||| ||||||||| ||||||||||||||||    
T  46016238 tgccgcccatttgggtcccacaatgctcgaagaattagtctccgtagttgcgcgtggaggatacccgattt 46016308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 148 - 213
Target Start/End: Original strand, 33529344 - 33529409
Alignment:
Q  148 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatac 213  Q
    ||||||| |||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||    
T  33529344 cttgccgcccatttgggtcccacaatactggagggattagtctccgcagttgcgcacggaggatac 33529409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 149 - 214
Target Start/End: Original strand, 35972431 - 35972496
Alignment:
Q  149 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 214  Q
    |||||| ||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||    
T  35972431 ttgccgcccatttgggtcccactatgttcgagggattagtctccgcagttgcgtgcggaggatacc 35972496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 148 - 214
Target Start/End: Original strand, 15133462 - 15133528
Alignment:
Q  148 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 214  Q
    |||| ||||| |||||||||||||||| | ||| |||||||||||||||||||||||||||||||||    
T  15133462 cttgtcgtccgtttgggtcccacaatgtttgagagattagtctccgcagttgcgcgcggaggatacc 15133528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 151 - 212
Target Start/End: Complemental strand, 35334149 - 35334088
Alignment:
Q  151 gccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggata 212  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||    
T  35334149 gccgcccatttgggtcccacaatactcgagggattagtctccgcagttgcgcgtgaaggata 35334088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 95
Target Start/End: Original strand, 17345557 - 17345641
Alignment:
Q  11 cacagattgaatctgtcactaatgataacttgattgttagtgttttcaatagcttggatcaacctttccttatttcttggttagt 95  Q
    |||||||||| || || ||||||||||| |||||| | | |||||| |||||||||||| |||||||||| ||||||||||||||    
T  17345557 cacagattgagtcagtgactaatgataatttgattatcaatgtttttaatagcttggatgaacctttcctcatttcttggttagt 17345641  T

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Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 93
Target Start/End: Complemental strand, 17138960 - 17138878
Alignment:
Q  11 cacagattgaatctgtcactaatgataacttgattgttagtgttttcaatagcttggatcaacctttccttatttcttggtta 93  Q
    |||||||||| || || ||||||||||| |||||| | | ||||||||| ||||||||| |||||||||| ||||||||||||    
T  17138960 cacagattgagtcagtgactaatgataatttgattatcaatgttttcaacagcttggatgaacctttcctcatttcttggtta 17138878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 152 - 207
Target Start/End: Complemental strand, 13948642 - 13948587
Alignment:
Q  152 ccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcgga 207  Q
    |||||||||||  || |||||||||||||||||||||||| |||||||||||||||    
T  13948642 ccgtccatttgaatctcacaatgctcgagggattagtctctgcagttgcgcgcgga 13948587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 156 - 215
Target Start/End: Original strand, 45994617 - 45994676
Alignment:
Q  156 ccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggataccc 215  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||| |||  |||||||||    
T  45994617 ccatttgggtctcacaatgctcgagagattagtctccgcagttgcacgccaaggataccc 45994676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 200
Target Start/End: Original strand, 13686690 - 13686741
Alignment:
Q  149 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgc 200  Q
    |||||||||||||||||| ||||| ||||||| ||||||||||| |||||||    
T  13686690 ttgccgtccatttgggtctcacaaggctcgagagattagtctccacagttgc 13686741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 212
Target Start/End: Complemental strand, 46250607 - 46250545
Alignment:
Q  150 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggata 212  Q
    ||||| ||||||||||||||| |||||||| | |||||||||||| |||| ||| ||||||||    
T  46250607 tgccgcccatttgggtcccacgatgctcgaagaattagtctccgcggttgtgcgtggaggata 46250545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 205
Target Start/End: Complemental strand, 25768741 - 25768685
Alignment:
Q  149 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcg 205  Q
    |||||| |||||||||| |||||||||| || |||||||||||| || |||||||||    
T  25768741 ttgccgcccatttgggtgccacaatgcttgaaggattagtctccacaattgcgcgcg 25768685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 37241394 - 37241358
Alignment:
Q  184 ttagtctccgcagttgcgcgcggaggatacccgattt 220  Q
    ||||||||||||||||||||||||||||||| |||||    
T  37241394 ttagtctccgcagttgcgcgcggaggatacctgattt 37241358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 214
Target Start/End: Original strand, 18841573 - 18841639
Alignment:
Q  149 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgc-agttgcgcgcggaggatacc 214  Q
    |||||| | |||||| ||| |||| |||| |||||||||||||||| |||||||| |||||||||||    
T  18841573 ttgccgccaatttggatcctacaaggctcaagggattagtctccgcaagttgcgcacggaggatacc 18841639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 203
Target Start/End: Complemental strand, 36990147 - 36990093
Alignment:
Q  149 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcg 203  Q
    ||||||||||||||  ||||||||||||||||| |||||| | ||||||| ||||    
T  36990147 ttgccgtccatttgaatcccacaatgctcgaggaattagtattcgcagttacgcg 36990093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 216
Target Start/End: Complemental strand, 32005177 - 32005132
Alignment:
Q  171 aatgctcgagggattagtctccgcagttgcgcgcggaggatacccg 216  Q
    |||||||||| |||||||||||||| ||  ||||||||||||||||    
T  32005177 aatgctcgagagattagtctccgcaattatgcgcggaggatacccg 32005132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 193
Target Start/End: Original strand, 51853784 - 51853828
Alignment:
Q  149 ttgccgtccatttgggtcccacaatgctcgagggattagtctccg 193  Q
    |||| |||||||| |||| |||||| |||||||||||||||||||    
T  51853784 ttgcggtccattttggtctcacaatactcgagggattagtctccg 51853828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 4e-26; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 150 - 214
Target Start/End: Complemental strand, 42297494 - 42297430
Alignment:
Q  150 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 214  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  42297494 tgccgtccatttgggtctcacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 42297430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 149 - 220
Target Start/End: Original strand, 15642543 - 15642614
Alignment:
Q  149 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccgattt 220  Q
    |||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  15642543 ttgccgcccatttgggtcccacaatgctcgagagattattctccgcagttgcgcgcggaggatacccgattt 15642614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 157 - 220
Target Start/End: Original strand, 16756178 - 16756241
Alignment:
Q  157 catttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccgattt 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  16756178 catttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatactcgattt 16756241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 166 - 220
Target Start/End: Complemental strand, 18428178 - 18428124
Alignment:
Q  166 cccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccgattt 220  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  18428178 cccacaatgctcgagggattagtctctgcagttgcgcgcggaggatacccgattt 18428124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 150 - 216
Target Start/End: Original strand, 28724761 - 28724827
Alignment:
Q  150 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccg 216  Q
    ||||||||||||| |||| |||||| |||||||||||||||||||| ||||||||||||||||||||    
T  28724761 tgccgtccatttgagtcctacaatgttcgagggattagtctccgcaattgcgcgcggaggatacccg 28724827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 150 - 216
Target Start/End: Original strand, 36806700 - 36806766
Alignment:
Q  150 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccg 216  Q
    ||||| |||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  36806700 tgccgcccatttgggttccacaatgctcgagggattagtctctgcagttgcacgcggaggatacccg 36806766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 150 - 220
Target Start/End: Original strand, 49071666 - 49071736
Alignment:
Q  150 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccgattt 220  Q
    |||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||| |||| |||||||    
T  49071666 tgccgttcatttgggtcccacaatgctcgagagattagtctccgcagttgcgtgcggaagatatccgattt 49071736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 151 - 215
Target Start/End: Complemental strand, 9781040 - 9780976
Alignment:
Q  151 gccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggataccc 215  Q
    |||| ||||||||||||||||||||||||||||||||| |||| ||||| |||||||| ||||||    
T  9781040 gccgcccatttgggtcccacaatgctcgagggattagtatccgtagttgggcgcggagaataccc 9780976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 148 - 220
Target Start/End: Original strand, 46864178 - 46864250
Alignment:
Q  148 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccgattt 220  Q
    ||||||||||||||||||  ||||||| |||||||||||||||| ||||||||||||  |||||||| |||||    
T  46864178 cttgccgtccatttgggtttcacaatgttcgagggattagtctctgcagttgcgcgcaaaggatacctgattt 46864250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 156 - 215
Target Start/End: Original strand, 22022215 - 22022274
Alignment:
Q  156 ccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggataccc 215  Q
    ||||||||||||||||||  ||||||||||||||||||||||||| || |||||||||||    
T  22022215 ccatttgggtcccacaatattcgagggattagtctccgcagttgcacgtggaggataccc 22022274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 150 - 220
Target Start/End: Original strand, 12035639 - 12035709
Alignment:
Q  150 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccgattt 220  Q
    ||||| |||||||||||||||||||||||||||||||||||| ||| |||| || ||| ||||| ||||||    
T  12035639 tgccgcccatttgggtcccacaatgctcgagggattagtctcagcaattgcacgtggatgatactcgattt 12035709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 148 - 214
Target Start/End: Original strand, 44913196 - 44913262
Alignment:
Q  148 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 214  Q
    ||||||| |||| |||||||||||||||||||| |||||||||| |||||| ||||| |||||||||    
T  44913196 cttgccgcccatctgggtcccacaatgctcgagagattagtctctgcagttacgcgcagaggatacc 44913262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 156 - 220
Target Start/End: Original strand, 10367599 - 10367663
Alignment:
Q  156 ccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccgattt 220  Q
    |||||||||||| ||||||||||| |||||| |||||||||||||| ||| || |||||||||||    
T  10367599 ccatttgggtccaacaatgctcgaaggattaatctccgcagttgcgtgcgaagaatacccgattt 10367663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 148 - 220
Target Start/End: Original strand, 10750684 - 10750756
Alignment:
Q  148 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccgattt 220  Q
    ||||||| |||||||| || ||||||| |||||||||||||||   ||||||||||| ||||||||| |||||    
T  10750684 cttgccgcccatttggatcgcacaatgttcgagggattagtctttacagttgcgcgcagaggatacctgattt 10750756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 214
Target Start/End: Complemental strand, 7242834 - 7242795
Alignment:
Q  175 ctcgagggattagtctccgcagttgcgcgcggaggatacc 214  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  7242834 ctcgagggattagtctccgcagttgcgcgcggaagatacc 7242795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 205
Target Start/End: Complemental strand, 6607739 - 6607691
Alignment:
Q  157 catttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcg 205  Q
    ||||| |||| ||||||||||||||||||||||||||||| ||| ||||    
T  6607739 catttaggtctcacaatgctcgagggattagtctccgcagctgcacgcg 6607691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 163 - 214
Target Start/End: Original strand, 32534184 - 32534235
Alignment:
Q  163 ggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 214  Q
    |||| ||||||||||||| | |||||||||||| |||||||| |||||||||    
T  32534184 ggtctcacaatgctcgagaggttagtctccgcaattgcgcgcagaggatacc 32534235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 220
Target Start/End: Original strand, 2044494 - 2044556
Alignment:
Q  158 atttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccgattt 220  Q
    |||||||| ||||||||||| || |||||||||| |||||| ||||  ||| |||||||||||    
T  2044494 atttgggttccacaatgctcaagagattagtctctgcagtttcgcgtagagaatacccgattt 2044556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 211
Target Start/End: Complemental strand, 39547408 - 39547355
Alignment:
Q  158 atttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggat 211  Q
    |||| |||| ||||||| |||| |||||| ||||||||||||||||| ||||||    
T  39547408 atttaggtctcacaatgttcgacggattaatctccgcagttgcgcgcagaggat 39547355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 6e-25; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 150 - 216
Target Start/End: Original strand, 29059894 - 29059960
Alignment:
Q  150 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccg 216  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  29059894 tgccgcccatttgggtcccacaatgcttgagggattagtctccgcagttgcgcgcggaggatacccg 29059960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 150 - 216
Target Start/End: Original strand, 31492192 - 31492258
Alignment:
Q  150 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccg 216  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31492192 tgccgcccatttaggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccg 31492258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 158 - 220
Target Start/End: Complemental strand, 37339777 - 37339715
Alignment:
Q  158 atttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccgattt 220  Q
    |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  37339777 atttgggtcccataatgctcgagggattagtctccgcagttgcgcacggaggatacccgattt 37339715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 158 - 215
Target Start/End: Original strand, 28665187 - 28665244
Alignment:
Q  158 atttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggataccc 215  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  28665187 attttggtcccacaatgctcgagggattagtctccgcagttgcacgcggaggataccc 28665244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 156 - 214
Target Start/End: Complemental strand, 21747086 - 21747028
Alignment:
Q  156 ccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 214  Q
    |||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||    
T  21747086 ccatttgggtcccacaatcctcgagggattagtcttcgcagttgtgcgcggaggatacc 21747028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 148 - 216
Target Start/End: Complemental strand, 11486798 - 11486730
Alignment:
Q  148 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccg 216  Q
    ||||||| |||||||||| ||||||||||| || ||||||||||  |||||||||||||||||||||||    
T  11486798 cttgccgcccatttgggttccacaatgctcaagagattagtctctacagttgcgcgcggaggatacccg 11486730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 148 - 203
Target Start/End: Complemental strand, 19477303 - 19477249
Alignment:
Q  148 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcg 203  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  19477303 cttgccggccatttgggtcccacaatgct-gagggattagtctccgcagttgcgcg 19477249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 156 - 214
Target Start/End: Original strand, 31776513 - 31776571
Alignment:
Q  156 ccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 214  Q
    |||||||||||||||||| |||||||||||| ||| |||||||||| ||||||||||||    
T  31776513 ccatttgggtcccacaatactcgagggattaatcttcgcagttgcgggcggaggatacc 31776571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 148 - 213
Target Start/End: Original strand, 20207584 - 20207649
Alignment:
Q  148 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatac 213  Q
    |||||||  ||||||| ||| |||||||||||||||||||||||||||||||||| | ||||||||    
T  20207584 cttgccgcgcatttggatcctacaatgctcgagggattagtctccgcagttgcgcacagaggatac 20207649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 148 - 216
Target Start/End: Original strand, 24172296 - 24172364
Alignment:
Q  148 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccg 216  Q
    ||||||| ||| |||| ||||||||||||||| ||||||||||  |||||||||||||||| |||||||    
T  24172296 cttgccgcccacttggatcccacaatgctcgaaggattagtctatgcagttgcgcgcggagtatacccg 24172364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 156 - 216
Target Start/End: Original strand, 35707941 - 35708001
Alignment:
Q  156 ccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccg 216  Q
    |||||| | ||| ||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  35707941 ccatttagatcctacaatgctcgagggattagtctctgcagttgcgcgtggaggatacccg 35708001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 156 - 220
Target Start/End: Complemental strand, 42741854 - 42741791
Alignment:
Q  156 ccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccgattt 220  Q
    |||||||||||| | ||| |||||||||||| |||| ||||||||||||||||||||||||||||    
T  42741854 ccatttgggtcc-ataatactcgagggattaatctctgcagttgcgcgcggaggatacccgattt 42741791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 149 - 202
Target Start/End: Complemental strand, 29428845 - 29428792
Alignment:
Q  149 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgc 202  Q
    |||||| |||||||| |||||||||| |||||||||||||||| ||||||||||    
T  29428845 ttgccgaccatttggatcccacaatgttcgagggattagtctctgcagttgcgc 29428792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 169 - 213
Target Start/End: Complemental strand, 36821113 - 36821069
Alignment:
Q  169 acaatgctcgagggattagtctccgcagttgcgcgcggaggatac 213  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||    
T  36821113 acaatgctcgagggattagtctctgcagttgcgcgcagaggatac 36821069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 148 - 212
Target Start/End: Original strand, 32470003 - 32470069
Alignment:
Q  148 cttgccgtccatttgggtcccacaat--gctcgagggattagtctccgcagttgcgcgcggaggata 212  Q
    ||||||||||||||||||| ||||||  ||||||| ||||||| | ||||||||| |||||||||||    
T  32470003 cttgccgtccatttgggtctcacaatatgctcgagagattagtgttcgcagttgcacgcggaggata 32470069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 148 - 220
Target Start/End: Original strand, 46373760 - 46373834
Alignment:
Q  148 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagtt--gcgcgcggaggatacccgattt 220  Q
    ||||||| | ||||||||| ||||||||||||| |||||||||  ||||||  ||||||||| ||||||||||||    
T  46373760 cttgccgcctatttgggtcacacaatgctcgagagattagtcttggcagtttcgcgcgcggaagatacccgattt 46373834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 188
Target Start/End: Original strand, 14545032 - 14545070
Alignment:
Q  150 tgccgtccatttgggtcccacaatgctcgagggattagt 188  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  14545032 tgccgtccatttgggtcccacaatgctcgatggattagt 14545070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 211
Target Start/End: Complemental strand, 28828814 - 28828756
Alignment:
Q  153 cgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggat 211  Q
    |||||||||||||| ||||| |||| | |||||||||| ||||||||| ||||||||||    
T  28828814 cgtccatttgggtctcacaaggctcaatggattagtctgcgcagttgctcgcggaggat 28828756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 155 - 220
Target Start/End: Original strand, 3231313 - 3231378
Alignment:
Q  155 tccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccgattt 220  Q
    ||||||| |||||||||||| ||||| |||||| |||  ||||||  |||||||||||||||||||    
T  3231313 tccatttaggtcccacaatgttcgagagattagactcaccagttgtacgcggaggatacccgattt 3231378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 150 - 216
Target Start/End: Original strand, 28537479 - 28537541
Alignment:
Q  150 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccg 216  Q
    ||||| ||||||||||||    ||||| ||||||||||||||||||||||| |||| ||||||||||    
T  28537479 tgccgcccatttgggtcc----atgcttgagggattagtctccgcagttgcacgcgaaggatacccg 28537541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 153 - 214
Target Start/End: Original strand, 45778956 - 45779017
Alignment:
Q  153 cgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 214  Q
    ||||| |||| ||| |||||| |||||||||||||||||||||||||||   ||||||||||    
T  45778956 cgtccgtttgagtctcacaatactcgagggattagtctccgcagttgcgaatggaggatacc 45779017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 157 - 204
Target Start/End: Original strand, 1424669 - 1424716
Alignment:
Q  157 catttgggtcccacaatgctcgagggattagtctccgcagttgcgcgc 204  Q
    ||||||||||||||||  || ||| |||||||||||||||||||||||    
T  1424669 catttgggtcccacaagacttgagagattagtctccgcagttgcgcgc 1424716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 220
Target Start/End: Complemental strand, 8839318 - 8839262
Alignment:
Q  165 tcccacaatgctcgagggattagtctccgcagttgcg--cgcggaggatacccgattt 220  Q
    ||||||||| ||||||||||||||||||||| |||||  |||||| ||||||||||||    
T  8839318 tcccacaatactcgagggattagtctccgcaattgcgcacgcgga-gatacccgattt 8839262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 216
Target Start/End: Original strand, 14552482 - 14552515
Alignment:
Q  183 attagtctccgcagttgcgcgcggaggatacccg 216  Q
    |||||||||||||||||||||| |||||||||||    
T  14552482 attagtctccgcagttgcgcgcagaggatacccg 14552515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 186
Target Start/End: Complemental strand, 13254153 - 13254117
Alignment:
Q  150 tgccgtccatttgggtcccacaatgctcgagggatta 186  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  13254153 tgccgcccatttaggtcccacaatgctcgagggatta 13254117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 216
Target Start/End: Original strand, 33299166 - 33299234
Alignment:
Q  148 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccg 216  Q
    |||||| ||||||||| | ||||||||||  | ||||||||||||||||||  ||| |||| |||||||    
T  33299166 cttgccatccatttggattccacaatgcttaatggattagtctccgcagttatgcgtggagaatacccg 33299234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 6e-25; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 158 - 216
Target Start/End: Original strand, 8757441 - 8757499
Alignment:
Q  158 atttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccg 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8757441 atttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccg 8757499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 148 - 220
Target Start/End: Original strand, 38331215 - 38331287
Alignment:
Q  148 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccgattt 220  Q
    ||||||| ||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||    
T  38331215 cttgccgcccatttgggtcccacaatgtttgagggattagtctccgcagttgcacgcggaggatacccgattt 38331287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 48204365 - 48204293
Alignment:
Q  148 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccgattt 220  Q
    |||| ||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  48204365 cttgtcgtccatttgggttccacaatgctcaagggattagtttccgcagttgcgcgcggaggatacccgattt 48204293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 150 - 212
Target Start/End: Original strand, 27763810 - 27763872
Alignment:
Q  150 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggata 212  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  27763810 tgccgtccatttgagtcccacaatgctcgagggattagtctccgcagttgcgcgcagaggata 27763872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 150 - 212
Target Start/End: Complemental strand, 30996017 - 30995955
Alignment:
Q  150 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggata 212  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30996017 tgccgcccatctgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggata 30995955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 152 - 220
Target Start/End: Original strand, 1642697 - 1642765
Alignment:
Q  152 ccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccgattt 220  Q
    |||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||| |||||||    
T  1642697 ccgtccatttgggtcccacaatacttgagggattagtttccgcagttgcgcgcggaggatatccgattt 1642765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 148 - 216
Target Start/End: Original strand, 25224786 - 25224854
Alignment:
Q  148 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccg 216  Q
    ||||||| |||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  25224786 cttgccgcccatttaggtcccacaatgctcaagggattagtctccgcagttgcacgcggaggatacccg 25224854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 156 - 220
Target Start/End: Original strand, 55123192 - 55123256
Alignment:
Q  156 ccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccgattt 220  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  55123192 ccatttgggtctcacaatgctcgagggattagtcttcgcagttgcgcgcggaggatacctgattt 55123256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 150 - 215
Target Start/End: Original strand, 20861337 - 20861402
Alignment:
Q  150 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggataccc 215  Q
    ||||| |||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  20861337 tgccgcccatttgggttccataatgctcgagggattagtctccgcagttgtgcgcggaggataccc 20861402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 40318482 - 40318435
Alignment:
Q  169 acaatgctcgagggattagtctccgcagttgcgcgcggaggatacccg 216  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||    
T  40318482 acaatgttcgagggattagtctccgcagttgcgcgcggaggatacccg 40318435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 157 - 220
Target Start/End: Original strand, 39950308 - 39950371
Alignment:
Q  157 catttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccgattt 220  Q
    ||||||| ||| ||||||||||| ||||||||||||||||||||  ||||||||||||| ||||    
T  39950308 catttggatccgacaatgctcgaaggattagtctccgcagttgcatgcggaggatacccaattt 39950371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 149 - 212
Target Start/End: Complemental strand, 44941317 - 44941255
Alignment:
Q  149 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggata 212  Q
    |||||| |||||||| |||||  |||||||||| ||||||||||||||||||||||||||||||    
T  44941317 ttgccgcccatttggatcccattatgctcgagg-attagtctccgcagttgcgcgcggaggata 44941255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 148 - 219
Target Start/End: Complemental strand, 48211014 - 48210943
Alignment:
Q  148 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccgatt 219  Q
    ||||||||| |||| ||||||||||| ||||||| |||  ||||||||||||| |||||| |||||||||||    
T  48211014 cttgccgtctatttaggtcccacaatactcgaggaattgatctccgcagttgcacgcggaagatacccgatt 48210943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 148 - 220
Target Start/End: Original strand, 40294699 - 40294771
Alignment:
Q  148 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccgattt 220  Q
    |||||||  ||||||  ||||||||| ||||| |||||||||||||||||||||| |  ||||||||||||||    
T  40294699 cttgccgctcatttgaatcccacaatactcgaaggattagtctccgcagttgcgcacaaaggatacccgattt 40294771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 43621342 - 43621294
Alignment:
Q  171 aatgctcgagggattagtctccgcagttgcgcgcggaggatacccgatt 219  Q
    ||||||||||||||||||||| | |||||||||| ||||||||||||||    
T  43621342 aatgctcgagggattagtctctgtagttgcgcgcagaggatacccgatt 43621294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 220
Target Start/End: Original strand, 15283159 - 15283230
Alignment:
Q  149 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccgattt 220  Q
    |||||| ||||||||||||||||||||||||| ||||||||| |  | |||| | ||||||| |||||||||    
T  15283159 ttgccgcccatttgggtcccacaatgctcgagagattagtcttcataattgcccacggaggagacccgattt 15283230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 192
Target Start/End: Original strand, 15446084 - 15446127
Alignment:
Q  149 ttgccgtccatttgggtcccacaatgctcgagggattagtctcc 192  Q
    |||||||||||||||||| |||||||||||| ||||||||||||    
T  15446084 ttgccgtccatttgggtctcacaatgctcgacggattagtctcc 15446127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 220
Target Start/End: Original strand, 11767197 - 11767269
Alignment:
Q  148 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccgattt 220  Q
    ||||||| ||||||| ||||||||||  | || |||||||||| |||| || |||| ||||||||||||||||    
T  11767197 cttgccgcccatttgagtcccacaatatttgaaggattagtcttcgcaattacgcgtggaggatacccgattt 11767269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 216
Target Start/End: Original strand, 22288322 - 22288390
Alignment:
Q  148 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccg 216  Q
    |||| |||||||||| ||  |||||| ||| ||| ||||||||| ||||||| ||||||||||||||||    
T  22288322 cttgtcgtccatttgagttacacaatactcaaggaattagtctctgcagttgtgcgcggaggatacccg 22288390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 213
Target Start/End: Original strand, 46725513 - 46725576
Alignment:
Q  149 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatac 213  Q
    |||| |||||| ||||||| |||||||| ||||||||||||||  ||||| ||||||||||||||    
T  46725513 ttgctgtccatctgggtcc-acaatgcttgagggattagtctcttcagttacgcgcggaggatac 46725576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 157 - 220
Target Start/End: Complemental strand, 29197 - 29134
Alignment:
Q  157 catttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccgattt 220  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  29197 catttgggtcccacaatgctcgtgggattagtctccacagttgcgcgcggaggatacccgattt 29134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 150 - 216
Target Start/End: Original strand, 26420 - 26486
Alignment:
Q  150 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccg 216  Q
    ||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||    
T  26420 tgccgcccatttgggtcccacaatgttcgagagattagtctccgcagttgcgcgcggaggatacccg 26486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 6e-22; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 151 - 216
Target Start/End: Complemental strand, 12836948 - 12836883
Alignment:
Q  151 gccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccg 216  Q
    |||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  12836948 gccgcccatttgggtcccacaatgcttgagggattagtctccccagttgcgcgcggaggatacccg 12836883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 153 - 215
Target Start/End: Original strand, 28099335 - 28099397
Alignment:
Q  153 cgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggataccc 215  Q
    |||||||||| || ||| ||||||||||||||||||||||||||||||| |||||||||||||    
T  28099335 cgtccatttgagttccataatgctcgagggattagtctccgcagttgcgagcggaggataccc 28099397  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 152 - 212
Target Start/End: Original strand, 9536858 - 9536918
Alignment:
Q  152 ccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggata 212  Q
    |||||||||| | | |||||||||||||||||||||||||||||||||||| |||||||||    
T  9536858 ccgtccatttagattccacaatgctcgagggattagtctccgcagttgcgctcggaggata 9536918  T

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Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 150 - 216
Target Start/End: Original strand, 12411237 - 12411303
Alignment:
Q  150 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccg 216  Q
    ||||| ||||||  ||||||||||||| ||||||||||||||| ||||||||||||| |||||||||    
T  12411237 tgccgcccatttaagtcccacaatgcttgagggattagtctccacagttgcgcgcgggggatacccg 12411303  T

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Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 150 - 220
Target Start/End: Original strand, 31412211 - 31412281
Alignment:
Q  150 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccgattt 220  Q
    ||||| |||||||||| ||||||||||||||  |||||||||| ||||||||| ||||||||| |||||||    
T  31412211 tgccgcccatttgggttccacaatgctcgagaaattagtctccacagttgcgcacggaggatatccgattt 31412281  T

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Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 157 - 214
Target Start/End: Original strand, 21910301 - 21910357
Alignment:
Q  157 catttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 214  Q
    ||||| ||||||||||| ||| |||||||||||||||||||||| |||||||||||||    
T  21910301 catttaggtcccacaatactc-agggattagtctccgcagttgcacgcggaggatacc 21910357  T

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Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 220
Target Start/End: Original strand, 278479 - 278550
Alignment:
Q  149 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccgattt 220  Q
    ||||||||||||| ||||||||||  ||| |||||||||||  | ||||||| | |||||||||||||||||    
T  278479 ttgccgtccatttaggtcccacaaaactcaagggattagtcgtcacagttgcacacggaggatacccgattt 278550  T

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Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 188
Target Start/End: Original strand, 423744 - 423782
Alignment:
Q  150 tgccgtccatttgggtcccacaatgctcgagggattagt 188  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  423744 tgccgtccatttgagtcccacaatgctcgagggattagt 423782  T

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Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 199
Target Start/End: Complemental strand, 21028895 - 21028845
Alignment:
Q  149 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttg 199  Q
    |||||| |||||||||| |||||| |||| |||||||||||||||||||||    
T  21028895 ttgccgcccatttgggtgccacaaggctcaagggattagtctccgcagttg 21028845  T

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Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 199
Target Start/End: Complemental strand, 21029032 - 21028982
Alignment:
Q  149 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttg 199  Q
    |||||| |||||||||| |||||| |||| |||||||||||||||||||||    
T  21029032 ttgccgcccatttgggtgccacaaggctcaagggattagtctccgcagttg 21028982  T

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Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 149 - 200
Target Start/End: Original strand, 28933226 - 28933277
Alignment:
Q  149 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgc 200  Q
    |||||| |||||||||| |||||||||||||| || |||| |||||||||||    
T  28933226 ttgccgcccatttgggttccacaatgctcgagtgaatagtatccgcagttgc 28933277  T

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Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 220
Target Start/End: Original strand, 1534347 - 1534409
Alignment:
Q  156 ccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccgattt 220  Q
    ||||||| ||| |||||||||||||| |||  |||||||||||  |||||||||||| |||||||    
T  1534347 ccatttgagtcgcacaatgctcgaggaattgatctccgcagtt--gcgcggaggatatccgattt 1534409  T

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Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 201
Target Start/End: Original strand, 6062129 - 6062182
Alignment:
Q  148 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcg 201  Q
    |||||||| ||||||||||| |||| | |||| |||||||||| ||||||||||    
T  6062129 cttgccgttcatttgggtcctacaacgttcgatggattagtcttcgcagttgcg 6062182  T

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Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 215
Target Start/End: Complemental strand, 15614617 - 15614560
Alignment:
Q  158 atttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggataccc 215  Q
    ||||| |||||||||||||| ||| |||||||| | |||||||| | |||||||||||    
T  15614617 atttgagtcccacaatgctctaggaattagtcttcacagttgcgtgtggaggataccc 15614560  T

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Target: scaffold0009 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 148 - 215
Target Start/End: Complemental strand, 27279 - 27212
Alignment:
Q  148 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggataccc 215  Q
    ||||||| |||||||| || ||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  27279 cttgccgcccatttggatctcacgatgctcgagggattagtcttcgcagttgcgcgcggaggataccc 27212  T

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Target: scaffold0071 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 192
Target Start/End: Complemental strand, 16108 - 16065
Alignment:
Q  149 ttgccgtccatttgggtcccacaatgctcgagggattagtctcc 192  Q
    |||||||||||||||||| |||||||||||| ||||||||||||    
T  16108 ttgccgtccatttgggtctcacaatgctcgacggattagtctcc 16065  T

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