View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2605_high_31 (Length: 329)
Name: NF2605_high_31
Description: NF2605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2605_high_31 |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 16 - 317
Target Start/End: Complemental strand, 7175522 - 7175218
Alignment:
| Q |
16 |
cagtaaggcgaacactatatctgctattgtgttatttgtttgcatcgccacatatatatcgtgtgagaggtgactgtcccgccaaacgctc---gctctt |
112 |
Q |
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|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||| |
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| T |
7175522 |
cagtaaggcggacactatatctgctgctgtgttatttgtttgcatcgccacatatatatcgtttgagaggtgactgtcccgccaaatgctcctcgctctt |
7175423 |
T |
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| Q |
113 |
tgacaatcaaacagagcatgaaggtcatcttcataatttccatcacacatagcatacacagaggtacagttcactcttttatctaacagttcggcacgag |
212 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||| |||||||| |
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| T |
7175422 |
tgacaatcaaacagaacatgaaggtcatcttcataatttccatcacacatagaacacatagaggtacagttcactcttttatctaacagtttggcacgag |
7175323 |
T |
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| Q |
213 |
ttggtaagcatccttggcatattctccatatcaagttcttcaccttaggaggagccttcaacttccaaattctattccagaaacctggtatgtgcagata |
312 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||| ||||| ||| |||| ||||| |
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| T |
7175322 |
ttggtaagcatcccaggcatattctccatatcaagttcttcaccttcggagaagccttcaacttccaaattccattccaaaaacccggtctgtgtagata |
7175223 |
T |
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| Q |
313 |
agaat |
317 |
Q |
| |
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|||| |
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| T |
7175222 |
cgaat |
7175218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 17 - 317
Target Start/End: Complemental strand, 26622063 - 26621760
Alignment:
| Q |
17 |
agtaaggcgaacactatatctgctattgtgttatttgtttgcatcgccacatatatatcgtgtgagaggtgactgtcccgccaaacgctc---gctcttt |
113 |
Q |
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|||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
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| T |
26622063 |
agtaaggcaaacactatatctgctgatgtgttatttgtttgcatcgccacatatatatcgtttgagaggtgactgtcccgccaaacgctcctcgctcttt |
26621964 |
T |
|
| Q |
114 |
gacaatcaaacagagcatgaaggtcatcttcataatttccatcacacatagcatacacagaggtacagttcactcttttatctaacagttcggcacgagt |
213 |
Q |
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|||||||||||| | |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| || ||||| ||| |
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| T |
26621963 |
gacaatcaaacaaaacatgaaggtcatcttcataatttccatcacacatagaacacacagaggtacagttcactcttttatctaacaatttggcacaagt |
26621864 |
T |
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| Q |
214 |
tggtaagcatccttggcatattctccatatcaagttcttcaccttaggaggagccttcaacttccaaattctattccagaaacctggtatgtgcagataa |
313 |
Q |
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|||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||| ||||||||||||| |
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| T |
26621863 |
tggtaagcatccccgacatattctccatatcaagttcttcaccttcggaggagccttcaacttccaaattccattccaaaaacccagtatgtgcagatac |
26621764 |
T |
|
| Q |
314 |
gaat |
317 |
Q |
| |
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|||| |
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|
| T |
26621763 |
gaat |
26621760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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