View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2605_high_32 (Length: 326)

Name: NF2605_high_32
Description: NF2605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2605_high_32
NF2605_high_32
[»] chr1 (1 HSPs)
chr1 (9-306)||(44252342-44252639)


Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 9 - 306
Target Start/End: Complemental strand, 44252639 - 44252342
Alignment:
Q  9 gagatgaaaaggaaggttgctttttagaaacaagtgtgcttttttggtgatggagaaaagcaagtcatttcctgaatactcttgttcttacactgaattt 108  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44252639 gagatcaaaaggaaggttgctttttagaaacaagtgtgcttttttggtgatggagaaaagcaagtcatttcctgaatactcttgttcttacactgaattt 44252540  T
Q  109 ggatacagtgaaaggtctaactcatataatttcaatggaccaagtgataagggaagtggtttttctgcatcaaatgattcagagcttaagaggaagaaga 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44252539 ggatacagtgaaaggtctaactcatataatttcaatggaccaagtgataagggaagtggtttttctgcatcaaatgattcagagcttaagaggaagaaga 44252440  T
Q  209 gaatcaagtcttataatgtgttggcagtggaaggaaagcttaaaagtagtgtaagaaacagcttcaagtggatcaagaacaagttcagcgatgttcgg 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44252439 gaatcaagtcttataatgtgttggcagtggaaggaaagcttaaaagtagtgtaagaaacagcttcaagtggatcaagaacaagttcagcgatgttcgg 44252342  T

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