View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2605_high_33 (Length: 321)
Name: NF2605_high_33
Description: NF2605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2605_high_33 |
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Alignment Details
Target: chr2 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 17 - 185
Target Start/End: Original strand, 2950583 - 2950751
Alignment:
| Q |
17 |
ctcaaacaattcaaatatatgtatcttttattcccttttctccataatccaatatcttaatcttaattacccaattatttccacgtgttatcttcccttc |
116 |
Q |
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| T |
2950583 |
ctcaaacaattcaaatatatgtatcttttattcccttttctccataatccaatatcttaatcttaattacccaattatttccacgtgttatcttcccttc |
2950682 |
T |
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| Q |
117 |
aagctctattttgtagaggaaatcctccatgattgtaaagaaaatgtgaatcttctaagaagatccacc |
185 |
Q |
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| T |
2950683 |
aaggtctattttgtaaaggaaatcctccatgattgtaaaaaaaatgtgaatcttctaagaagatccacc |
2950751 |
T |
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Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 257 - 305
Target Start/End: Original strand, 2950822 - 2950870
Alignment:
| Q |
257 |
gaaaaccttcattcctcattatattaaaagataatttaggatccattct |
305 |
Q |
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| T |
2950822 |
gaaaaccttcattcctcattatattaaaagataatttaggatccattct |
2950870 |
T |
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