View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2605_high_35 (Length: 320)
Name: NF2605_high_35
Description: NF2605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2605_high_35 |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 6 - 303
Target Start/End: Complemental strand, 41514598 - 41514303
Alignment:
| Q |
6 |
aggagcacagataaagtagtttatgtggaaaattaaggtatatgtatttgttcgtatattgaaacacatgatttgtctgtcnnnnnnnagtgacaaatgt |
105 |
Q |
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| T |
41514598 |
aggaacacaaataaagtagtttatgtggaaaattaaggtatatgtatttgttcgtatattgaaacacatgatttgtctgtctttttttagtgacaaatgt |
41514499 |
T |
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| Q |
106 |
tattggttaattgttagtattatttttttcccttcaaannnnnnnnnnnnnaacaaatcaaaatgatatatatattcaaaaatgttaccaatcgcacaag |
205 |
Q |
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| T |
41514498 |
tattggttaattgttagtattatttttttcccttcaa---tttttttttttaacaaatcaaaatgatatatatactcaaaagtgttaccaatcgcataag |
41514402 |
T |
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| Q |
206 |
atgcgcaaagaggaaatacc-ccaaagtttacaaaattacaaagattgtctacccattaaagagccaaccaaaaatctaaattacatgaacacatccat |
303 |
Q |
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| T |
41514401 |
atgcgcaaagaggaaacaccaccaaaatttacaaaattacaaagagtgtctacccattaaagggccaaccaaaaagctaaattacatgagcacatccat |
41514303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 159 - 303
Target Start/End: Complemental strand, 11520393 - 11520252
Alignment:
| Q |
159 |
caaatcaaaatgatatatatattcaaaaatgttaccaatcgcacaagatgcgcaaagaggaaatacc-ccaaagtttacaaaattacaaagattgtctac |
257 |
Q |
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||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||| | | || |
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| T |
11520393 |
caaatcaaaatgatatatatactcaaaggtgttaccaatcgtacaagatgcgcaaagaggaaacaccaccaaagtttacaaaattacaaagactttttaa |
11520294 |
T |
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| Q |
258 |
ccattaaagagccaaccaaaaatctaaattacatgaacacatccat |
303 |
Q |
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| T |
11520293 |
cc----aagggccaaccaagaatctaaattacatgagcacatccat |
11520252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 214
Target Start/End: Original strand, 8233784 - 8233843
Alignment:
| Q |
157 |
aacaaatcaaaatgatatatatattc--aaaaatgttaccaatcgcacaagatgcgcaaa |
214 |
Q |
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| T |
8233784 |
aacaaatcaaaatcatatatatactctcaaaagtgttttcaatcgcacaagatgcgcaaa |
8233843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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