View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2605_high_41 (Length: 293)
Name: NF2605_high_41
Description: NF2605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2605_high_41 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 15 - 276
Target Start/End: Complemental strand, 38605647 - 38605382
Alignment:
| Q |
15 |
tcactcttcttctcaaggttacacttacacttaccttcctccttgtccagatgatgtcactgcatctgaagatttccggatagtaatgacatttcttagt |
114 |
Q |
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| T |
38605647 |
tcactcttcttctcaaggctacacttacacttaccttcctccttgtccagacgatgtcactgcatctgaagatttccggatagtgatgacatttcttagt |
38605548 |
T |
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| Q |
115 |
ggtactcctcctcctctccataattattattacaaatttaatagatgtttcagtttcacatgcttggaaactctg-------catcagcatcaaccacat |
207 |
Q |
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| T |
38605547 |
ggtactcct---cctctccataattataattacaaatttaatagatgtttcagtttcacatgcttggaaactctgcatcagccatcagcatcaaccacat |
38605451 |
T |
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| Q |
208 |
tttctactcaaaattattgaaacctcctgtcaaactataccagttgaaaccccaaaggtttctcctcat |
276 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38605450 |
tttctactcaaaattattgaaacctcctgtcaaactataccagttgaaaccccaaaggtttctcctcat |
38605382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 205 - 276
Target Start/End: Original strand, 44459952 - 44460023
Alignment:
| Q |
205 |
cattttctactcaaaattattgaaacctcctgtcaaactataccagttgaaaccccaaaggtttctcctcat |
276 |
Q |
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| T |
44459952 |
cattttgtactcaaagttattgaaacctcctcacaaactaaattaattgaaaccccaaaggtttcgcctcat |
44460023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 205 - 276
Target Start/End: Original strand, 44467485 - 44467556
Alignment:
| Q |
205 |
cattttctactcaaaattattgaaacctcctgtcaaactataccagttgaaaccccaaaggtttctcctcat |
276 |
Q |
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|||||| |||||||| ||||||||||||||| ||||||| | | ||||||||||||||||||| |||||| |
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| T |
44467485 |
cattttgtactcaaagttattgaaacctcctcacaaactaaattaattgaaaccccaaaggtttcgcctcat |
44467556 |
T |
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