View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2605_high_44 (Length: 272)
Name: NF2605_high_44
Description: NF2605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2605_high_44 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 2442878 - 2442622
Alignment:
| Q |
1 |
atgagtttgttaaccttgtttttgtttcaagttcatctcactgacactgtttaccagaaattgatcgagggctcctctatattaccattttacaatgcaa |
100 |
Q |
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| T |
2442878 |
atgagtttgttaaccttgtttttgtttcaagttcatcacactaacactgtttaccagaaattgatcgagggcttctttatattaccattttacaatcaat |
2442779 |
T |
|
| Q |
101 |
ttctagaaattttgtatcattctatcgcatgcagagcaagatagtctgaaaatggttgcaaaaagagaagctagagttcggtcattgaatcaaacgatca |
200 |
Q |
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| T |
2442778 |
ttatacaaattttgtatcattctatcgcacgcagagcaagatagtctgaaaatggttgcaaaaagagaagctagagttcggtcattgaatcaaacgatca |
2442679 |
T |
|
| Q |
201 |
tacgaagccaaattcacattgatgcataaagatgtttttagctttaactgaataatc |
257 |
Q |
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| T |
2442678 |
tacgaagccaaattcacattgatgcataaagatgtttttagctttaacagaataatc |
2442622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 14 - 146
Target Start/End: Original strand, 50984196 - 50984328
Alignment:
| Q |
14 |
ccttgtttttgtttcaagttcatctcactgacactgt--ttaccagaaattgatcgagggctcctctatattaccattttacaatgcaattctagaaatt |
111 |
Q |
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| T |
50984196 |
ccttgattttgtttcaacttcatctcactgaaactgtgttttctagaaattgattgagggcttctctatattaccatttt-caat-caattctacaaatt |
50984293 |
T |
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| Q |
112 |
ttgtatcattctatcgcatgcagagcaagatagtc |
146 |
Q |
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| T |
50984294 |
ttgttttaatctgtcacatgcagagcaagatagtc |
50984328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 134 - 170
Target Start/End: Original strand, 34019916 - 34019952
Alignment:
| Q |
134 |
gagcaagatagtctgaaaatggttgcaaaaagagaag |
170 |
Q |
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| T |
34019916 |
gagcaagatagtctgaaaatggttgcaaaaagagaag |
34019952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 229
Target Start/End: Original strand, 34019971 - 34020028
Alignment:
| Q |
172 |
tagagttcggtcattgaatcaaacgatcatacgaagccaaattcacattgatgcataa |
229 |
Q |
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| T |
34019971 |
tagagttcggtcattgaaacaaatgatcatacaaagccaaattcatgtcgatgcataa |
34020028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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