View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2605_high_5 (Length: 670)
Name: NF2605_high_5
Description: NF2605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2605_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 467; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 17 - 562
Target Start/End: Complemental strand, 40360419 - 40359870
Alignment:
| Q |
17 |
atgtaagagttcaaacattgttgtcatgcaccaaaaatcacgtagtgctgacagtgttgttcaaagtgttgcagcaaggaaaacaaaaatctcaaacgag |
116 |
Q |
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| T |
40360419 |
atgtaagagttcaaacattgttgtcatgcaccaaaaatcacgtagtgctgacagtgttgttcaaagtgttgcagcaaggaaaacaaaaatctcaaacgag |
40360320 |
T |
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| Q |
117 |
gtaatcaa----ctttctattaaaatcttgttttaaattgcaatccacaaccgcaattattgcagtcacaataaatattcgataaaaccaaactcccatc |
212 |
Q |
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|||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40360319 |
gtaatcaattaactttctcttaaaatattgttttaaattgcaatccacaaccgcaattattgcagtcacaataaatattcgataaaaccaaactcccatc |
40360220 |
T |
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| Q |
213 |
taaagactaacattgttctttgtttcaaataggtacctcagattgttgaaagtgaaacaattacaaagagaaaagggaataagaacaagaaatttgggaa |
312 |
Q |
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|||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40360219 |
taaagactaacattgttccttgtttcaaataggtacctgagattgttgaaagtgaaacaattacaaagagaaaagggaataagaacaagaaatttgggaa |
40360120 |
T |
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| Q |
313 |
agtgagaactctactaaaggttaagtcatgctaccacccaatatcttcctgtacaggtgaacacagaagccgtcttgttgctgcaaaagcagcaaattga |
412 |
Q |
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| T |
40360119 |
agtgagaactctactaaaggttaagtcatgctaccacccaatatcttcctgtacaggtgaacacagaagccgtcttgttgctgcaaaagcagcaaattga |
40360020 |
T |
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| Q |
413 |
tcatatactatatgatattattacttgctacgtactaggtattagaagaatgaagcagcttgtaataatttcatttttctccctc--nnnnnnnnnncta |
510 |
Q |
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| T |
40360019 |
tc--atactatatgatattattacttgctacgtactaggtattagaagaatgaagcagcttgtaataatttcatttttctccctcttttttttttttcta |
40359922 |
T |
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| Q |
511 |
ttactttttagccatttttggcttgtttaatcgattcaattccttatgaatc |
562 |
Q |
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| T |
40359921 |
ttactttttagccatttttggcttgtttaatcgattcaattccttatgaatc |
40359870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 579 - 656
Target Start/End: Complemental strand, 40359876 - 40359798
Alignment:
| Q |
579 |
atgaatcagaagaattagaccacaacacatggttgtctttgttcattatgtgaaatgcctagtac-acatttttctctg |
656 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
40359876 |
atgaatcagaagaatcagaccacaacacatggttgtctttgttcattatgtgaaatgcctagtactacatttttctctg |
40359798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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