View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2605_high_50 (Length: 241)

Name: NF2605_high_50
Description: NF2605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2605_high_50
NF2605_high_50
[»] chr8 (1 HSPs)
chr8 (19-222)||(1424716-1424919)
[»] chr3 (4 HSPs)
chr3 (19-203)||(50057902-50058096)
chr3 (19-100)||(28095451-28095532)
chr3 (126-203)||(28095338-28095414)
chr3 (38-100)||(46146808-46146870)
[»] chr2 (2 HSPs)
chr2 (19-167)||(25475651-25475810)
chr2 (19-96)||(41894250-41894327)
[»] chr7 (3 HSPs)
chr7 (25-203)||(29442848-29443034)
chr7 (106-173)||(39363782-39363849)
chr7 (19-80)||(3006880-3006941)
[»] chr1 (1 HSPs)
chr1 (19-100)||(2411885-2411966)


Alignment Details
Target: chr8 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 19 - 222
Target Start/End: Original strand, 1424716 - 1424919
Alignment:
Q  19 attctggagccactaaccacatgacacccttacctacacacttctccacttattcaccttgtcctagcaacaagaaattatctatcacttataactgtag 118  Q
    |||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  1424716 attctggagccactgaccacatgacacccttacttacatacttctccacttattcaccttgtcttagcaacaagaaaatatctatcacttataactgtag 1424815  T
Q  119 caagttaaggaaatgtccaaataaacccaactataatcctacaaaatgtccttcaaaatttccaaaatgtccactagcctaatttgcactccctatatct 218  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  1424816 caggttaaggaaatgtccaaataaacccaactataatcctacaaaatgtccttcaaaatttccaaaatgtccactagcctaatttgcactccgtatatct 1424915  T
Q  219 cttc 222  Q
    ||||    
T  1424916 cttc 1424919  T

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Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 19 - 203
Target Start/End: Original strand, 50057902 - 50058096
Alignment:
Q  19 attctggagccactaaccacatgacacccttacctacacacttctccacttattcaccttgtcctagcaacaagaaattatcta-----------tcact 107  Q
    ||||||||||||||||||||||||||||| |||  |||||||| ||||||||||||||||||||||||||||||||| |||| |           || ||    
T  50057902 attctggagccactaaccacatgacacccctacacacacacttttccacttattcaccttgtcctagcaacaagaaaatatccatagcagatagttccct 50058001  T
Q  108 tataactgtagcaagttaaggaaatgtccaaataaacccaactataatcctacaaaatgtccttcaaaatttccaaaatgtccactagcctaattt 203  Q
    | |||| |||||  ||  ||||||||||||||||| |||||||||||||||| |||||||||||| | ||| ||||| ||||||||||||||||||    
T  50058002 tctaaccgtagcgggtcgaggaaatgtccaaataagcccaactataatcctagaaaatgtccttc-atattcccaaattgtccactagcctaattt 50058096  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 28095532 - 28095451
Alignment:
Q  19 attctggagccactaaccacatgacacccttacctacacacttctccacttattcaccttgtcctagcaacaagaaattatc 100  Q
    |||||||||||||  | ||||||||||||||||| |||||||| | |||||||||||||| |||||||||||||||| ||||    
T  28095532 attctggagccaccgagcacatgacacccttacccacacacttttacacttattcaccttatcctagcaacaagaaaatatc 28095451  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 126 - 203
Target Start/End: Complemental strand, 28095414 - 28095338
Alignment:
Q  126 aggaaatgtccaaataaacccaactataatcctacaaaatgtccttcaaaatttccaaaatgtccactagcctaattt 203  Q
    |||||||||||| |||| |||||||||||||||||||||| |||||| | ||| ||||| || |||||||||||||||    
T  28095414 aggaaatgtccagataagcccaactataatcctacaaaatatccttc-atattcccaaattgcccactagcctaattt 28095338  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 38 - 100
Target Start/End: Complemental strand, 46146870 - 46146808
Alignment:
Q  38 catgacacccttacctacacacttctccacttattcaccttgtcctagcaacaagaaattatc 100  Q
    ||||||||||||||| ||| |  ||||||||||| ||||||||||||||||||||||| ||||    
T  46146870 catgacacccttacccacagaagtctccacttatacaccttgtcctagcaacaagaaaatatc 46146808  T

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Target: chr2 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 19 - 167
Target Start/End: Complemental strand, 25475810 - 25475651
Alignment:
Q  19 attctggagccactaaccacatgacacccttacctacacacttctccacttattcaccttgtcctagcaacaagaaattatcta-----------tcact 107  Q
    |||||||||||||| ||||||||||||| | | | ||||||||||||||||||||||||| |||||||||||||||| |||  |           || ||    
T  25475810 attctggagccactgaccacatgacaccgtaagccacacacttctccacttattcaccttatcctagcaacaagaaaatatacatagcatatggttccct 25475711  T
Q  108 tataactgtagcaagttaaggaaatgtccaaataaacccaactataatcctacaaaatgt 167  Q
    ||||| ||||||| |||||||||||||||||||||   ||||||||||||||||||||||    
T  25475710 tataattgtagcaggttaaggaaatgtccaaataagatcaactataatcctacaaaatgt 25475651  T

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Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 41894250 - 41894327
Alignment:
Q  19 attctggagccactaaccacatgacacccttacctacacacttctccacttattcaccttgtcctagcaacaagaaat 96  Q
    |||||||||||||| ||||||||||||| |||||||||||||| || || ||||||||||||||||||||||| ||||    
T  41894250 attctggagccactcaccacatgacacctttacctacacacttttctacctattcaccttgtcctagcaacaaaaaat 41894327  T

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Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 203
Target Start/End: Complemental strand, 29443034 - 29442848
Alignment:
Q  25 gagccactaaccacatgacacccttacctacacacttctccacttattcaccttgtcctagcaacaagaaattatcta-----------tcacttataac 113  Q
    |||||||| ||||||||||||||||| | ||||||  |||||||||||| ||||||||||| ||||||| |||||| |           || |||| ||     
T  29443034 gagccactcaccacatgacacccttatccacacac--ctccacttattctccttgtcctagaaacaagagattatcaacggaagatggttcccttaaaat 29442937  T
Q  114 tgtagcaagttaaggaaatgtccaaataaacccaactataatcctacaaaatgtccttcaaaatttccaaaatgtccactagcctaattt 203  Q
    |||||||  |||||||||| ||||||||||| |||||||| |||||||||||||||||  | |||  ||||||||| |||||||||||||    
T  29442936 tgtagcagattaaggaaatttccaaataaacacaactatagtcctacaaaatgtcctt-tatattcgcaaaatgtcaactagcctaattt 29442848  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 106 - 173
Target Start/End: Complemental strand, 39363849 - 39363782
Alignment:
Q  106 cttataactgtagcaagttaaggaaatgtccaaataaacccaactataatcctacaaaatgtccttca 173  Q
    ||||||||||||||| || |||||||||||||||||| |||| |||||||||||||||| ||| ||||    
T  39363849 cttataactgtagcaggtaaaggaaatgtccaaataagcccatctataatcctacaaaacgtctttca 39363782  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 3006880 - 3006941
Alignment:
Q  19 attctggagccactaaccacatgacacccttacctacacacttctccacttattcaccttgt 80  Q
    |||||||||||||| ||||||||||||| ||||| |||||||| || || ||||||||||||    
T  3006880 attctggagccactgaccacatgacacctttacccacacacttttctacctattcaccttgt 3006941  T

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Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 2411885 - 2411966
Alignment:
Q  19 attctggagccactaaccacatgacacccttacctacacacttctccacttattcaccttgtcctagcaacaagaaattatc 100  Q
    ||||| |||||||| ||||||||||||| |||||||||||||| || || ||||||||||||||||| ||||| ||| ||||    
T  2411885 attctagagccactcaccacatgacacctttacctacacacttttctacctattcaccttgtcctagtaacaaaaaaatatc 2411966  T

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