View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2605_low_11 (Length: 550)
Name: NF2605_low_11
Description: NF2605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2605_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-128; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 125 - 444
Target Start/End: Original strand, 35184876 - 35185215
Alignment:
| Q |
125 |
ctcatatagtatggtaagaagtttaatgattttacctgaaaattttgactttgaatccatcttctataaattccaccagaagaatggtttctcatgcgga |
224 |
Q |
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| T |
35184876 |
ctcatatagtatggtaagaagtttaatgattttacctgaaaattttgactttgaatccatcttctataaattccaccataagaatggtttctcatgcgga |
35184975 |
T |
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| Q |
225 |
aaaagaaataagtacttgatggattcgttgaagggagagaaattgatatact-------------------caatgcagaaggaaatgtgggtttgtgca |
305 |
Q |
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| T |
35184976 |
aaaagaaataagtacttgatgggatcgttgaagggagagaaattgatatattcatgcggaaggtaagtcaacaatgcagaaggaaatgtgggtttgtgca |
35185075 |
T |
|
| Q |
306 |
attgcacctcaacatgttaaatgtttatgaag-nnnnnnnacttttgagttgaatgtacatgacttgtactcaacgaaccccatgaacctgtttcccatg |
404 |
Q |
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| T |
35185076 |
attgcacctcaacatgttaaatgtttatgaagttttttttacttttgagttgaatgtacatgacttgtactcaacgaaccccatgaacctgtttcccatg |
35185175 |
T |
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| Q |
405 |
taactccaaaccaagaaaaccacaaacgggaagcaccaac |
444 |
Q |
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| T |
35185176 |
taactccaaaccaagaaaaccacaaacgggaagcaccaac |
35185215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 454 - 550
Target Start/End: Original strand, 35185304 - 35185404
Alignment:
| Q |
454 |
gttgtagaagaataagagcatggtgatttcaaatgatgattatgccccgaaacatttaattataat----atagagatagagatgaatgtgatgattttt |
549 |
Q |
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| T |
35185304 |
gttgtagaagaataagagcatggtgatttcaaatgatgattatgccccgaaacatttaattataatatagatagagatagagatgaatgtgatgattttt |
35185403 |
T |
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| Q |
550 |
t |
550 |
Q |
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| T |
35185404 |
t |
35185404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 14 - 61
Target Start/End: Original strand, 35184769 - 35184816
Alignment:
| Q |
14 |
taaatagatgaattacataatttagagaaagcagtagttttcttcatg |
61 |
Q |
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| T |
35184769 |
taaataaatgaattacataatttagagaaagcagtggttttcttcatg |
35184816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 153 - 213
Target Start/End: Original strand, 35179366 - 35179426
Alignment:
| Q |
153 |
attttacctgaaaattttgactttgaatccatcttctataaattccaccagaagaatggtt |
213 |
Q |
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| T |
35179366 |
attttacctgaaaatttggagtttgaatccatcttatctgaattcaaccggaagaacggtt |
35179426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 385 - 437
Target Start/End: Original strand, 15006858 - 15006910
Alignment:
| Q |
385 |
ccatgaacctgtttcccatgtaactccaaaccaagaaaaccacaaacgggaag |
437 |
Q |
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| T |
15006858 |
ccatgaacttgtttcccacataaccccaaaccaagaaaaccactaacaggaag |
15006910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 385 - 437
Target Start/End: Original strand, 15020975 - 15021027
Alignment:
| Q |
385 |
ccatgaacctgtttcccatgtaactccaaaccaagaaaaccacaaacgggaag |
437 |
Q |
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| T |
15020975 |
ccatgaacttgtttcccacataaccccaaaccaagaaaaccactaacaggaag |
15021027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 385 - 437
Target Start/End: Original strand, 15028093 - 15028145
Alignment:
| Q |
385 |
ccatgaacctgtttcccatgtaactccaaaccaagaaaaccacaaacgggaag |
437 |
Q |
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| T |
15028093 |
ccatgaacttgtttcccacataaccccaaaccaagaaaaccactaacaggaag |
15028145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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