View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2605_low_13 (Length: 535)
Name: NF2605_low_13
Description: NF2605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2605_low_13 |
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| [»] scaffold0006 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 36 - 475
Target Start/End: Complemental strand, 31172398 - 31171953
Alignment:
| Q |
36 |
ttgattctacgagaagtactataatggtatatacaaacagcatgatgaacccatctcatggtcatattaacaaaaaatgacatcttttgggagggagcat |
135 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||| |
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| T |
31172398 |
ttgattctacgagaagtactataatggtatatacagacagcatgatgaacccatctcgtggccatatcaacaaaaaatgacatcttttgggagggagcat |
31172299 |
T |
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| Q |
136 |
ttaattgttatcatccattgaagttaaattatgtatccattggtcaaagattctgcttaatgtctcgaggtctgaattctaatga-----ttgtttctta |
230 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
31172298 |
ttaattgttatcatccattgaagttaaattatgtatccattggtcaaagattctgcttaatgtctcgaggtctgaattctaatgtcaattttgtttctta |
31172199 |
T |
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| Q |
231 |
taatttactgtcttttaccttccggtcttctatttttgcatgatcatatatgtttagacgtttgtttcatttcatattgattctatcaattacaactcat |
330 |
Q |
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| T |
31172198 |
taatttactatcttttaccttcccgtcttctatttttccatgatcatatatgtttagacgtttgtttcatttcatattgattctatcaattacaactcat |
31172099 |
T |
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| Q |
331 |
aattttttatgtgtttgaacacttgtttcagttcaaattcaattatattgaatttttatctgagacttgcttaggatatttgaa-tagtttagacgcttg |
429 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||| |
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| T |
31172098 |
aattttttatgtgtttgaacacttgtttcaattcaaattcaattatattgaatttttatctgagacctgcttaggatatttgaattagtttaaacgcttg |
31171999 |
T |
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| Q |
430 |
atttaaattatttcaaatgaagattgttaagttccataacgcttag |
475 |
Q |
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| T |
31171998 |
atttaaattatttcaaatgaagattgttaggttccataacgcttag |
31171953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 256 - 513
Target Start/End: Original strand, 21655562 - 21655822
Alignment:
| Q |
256 |
tcttctatttttgcatgatcatatatgtttagacgtttgtttcatttcatattgattctatcaattacaactc---ataattttttatgtgtttgaacac |
352 |
Q |
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|||| ||||||| ||||||||||||||||| || |||||||||||||||||||||||||| || |||| || ||||||| ||| ||||||||| | |
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| T |
21655562 |
tcttatatttttccatgatcatatatgtttgaacacttgtttcatttcatattgattctatcgataacaattcataataatttcatatatgtttgaacgc |
21655661 |
T |
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| Q |
353 |
ttgtttcagttcaaattcaattatattgaatttttatctgagacttgcttaggatatttga-atagtttagacgcttgatttaaattatttcaaatgaag |
451 |
Q |
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| T |
21655662 |
ttgtttcaattcaaacccgattataatgaattggtatcagggaactgcttaagatacttgatttagtttagactcttgatttaaattattt-aaatgaag |
21655760 |
T |
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| Q |
452 |
attgttaagttccataacgcttagttgtaggtttggttgaacttgatatttagactagccgt |
513 |
Q |
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| T |
21655761 |
actgttatgttccataacacttagttattggtttggttgaacttggtaatcagactacccgt |
21655822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 170 - 496
Target Start/End: Original strand, 39323281 - 39323616
Alignment:
| Q |
170 |
atccattggtcaaagattctgcttaatgtctcgaggtctgaattctaatg---att--gtttcttataatttactgtcttttaccttccggtcttctatt |
264 |
Q |
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| T |
39323281 |
atccattggttaaggattctgttcgatgtcttgaggtctgaattctaattttaatttggtttcttatgatttaatatctttttccttttactcttctatt |
39323380 |
T |
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| Q |
265 |
tttgcatgatcatatatgtttagacgtttgtttcatttcatattgattctatcaattacaactc---ataattttttatgtgtttgaacacttgtttcag |
361 |
Q |
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| T |
39323381 |
tttcaatgatcatatatgtttgaacgcttatttcatttcataacgattctatcgatcgtaattcgtaataatttcgtatgtgtttgaacacttgtttcaa |
39323480 |
T |
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| Q |
362 |
ttcaaattcaattatattgaatttttatctgagacttgcttaggatatttgaat-agtttagacgcttgatttaaattatttcaaatgaagattgttaag |
460 |
Q |
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||||||| ||||||||||||| || | | | || |||| |||||||||| |||||| |||||||||||||||||||||||||||||||| | |
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| T |
39323481 |
ttcaaatcttattatattgaattgttcatgggggcctggttagaatatttgaattagtttaatgaattgatttaaattatttcaaatgaagattgttagg |
39323580 |
T |
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| Q |
461 |
ttccataacgcttagttgtaggtttggttgaacttg |
496 |
Q |
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| T |
39323581 |
ttttataacacttagttataggtttgattgaacttg |
39323616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 184 - 314
Target Start/End: Original strand, 147946 - 148081
Alignment:
| Q |
184 |
gattctgcttaatgtctcgaggtctgaattctaatg---att--gtttcttataatttactgtcttttaccttccggtcttctatttttgcatgatcata |
278 |
Q |
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||||||| |||||||| |||||||||||||||||| ||| ||||||||| ||||| | |||||| ||| | | |||||||||| |||||||||| |
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| T |
147946 |
gattctgtttaatgtcatgaggtctgaattctaatgtcaattctgtttcttatgatttaatatctttttactttcaatattctatttttccatgatcata |
148045 |
T |
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| Q |
279 |
tatgtttagacgtttgtttcatttcatattgattct |
314 |
Q |
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| T |
148046 |
tatgtttggacgcttgtttcatttcatattgattct |
148081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 422 - 519
Target Start/End: Original strand, 148483 - 148580
Alignment:
| Q |
422 |
gacgcttgatttaaattatttcaaatgaagattgttaagttccataacgcttagttgtaggtttggttgaacttgatatttagactagccgtggtttt |
519 |
Q |
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| T |
148483 |
gacgcttgatttaaattatttcaaatgatgatttttgggttctataatgcttaggcgtaggtttggttgaacatgttattcagattagccgtgatttt |
148580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 184 - 314
Target Start/End: Original strand, 13658185 - 13658320
Alignment:
| Q |
184 |
gattctgcttaatgtctcgaggtctgaattctaatg---att--gtttcttataatttactgtcttttaccttccggtcttctatttttgcatgatcata |
278 |
Q |
| |
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||||||| |||||||| |||||||||||||||||| ||| ||||||||| ||||| | |||||| ||| | | |||||||||| |||||||||| |
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| T |
13658185 |
gattctgtttaatgtcatgaggtctgaattctaatgtcaattctgtttcttatgatttaatatctttttactttcaatattctatttttccatgatcata |
13658284 |
T |
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| Q |
279 |
tatgtttagacgtttgtttcatttcatattgattct |
314 |
Q |
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| T |
13658285 |
tatgtttggacgcttgtttcatttcatattgattct |
13658320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 422 - 519
Target Start/End: Original strand, 13658722 - 13658819
Alignment:
| Q |
422 |
gacgcttgatttaaattatttcaaatgaagattgttaagttccataacgcttagttgtaggtttggttgaacttgatatttagactagccgtggtttt |
519 |
Q |
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|||||||||||||||||||||||||||| |||| || |||| |||| |||||| |||||||||||||||| || |||| ||| |||||||| |||| |
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| T |
13658722 |
gacgcttgatttaaattatttcaaatgatgatttttgggttctataatgcttaggcgtaggtttggttgaacatgttattcagattagccgtgatttt |
13658819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 264 - 350
Target Start/End: Complemental strand, 34102613 - 34102527
Alignment:
| Q |
264 |
ttttgcatgatcatatatgtttagacgtttgtttcatttcatattgattctatcaattacaactcataattttttatgtgtttgaac |
350 |
Q |
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| T |
34102613 |
ttttgtatgatcatatatgtttaaactcttgttttgattcgtattgattctatcaattccaattcataattgtgtatgtgtttgaac |
34102527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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