View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2605_low_14 (Length: 535)

Name: NF2605_low_14
Description: NF2605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2605_low_14
NF2605_low_14
[»] chr2 (7 HSPs)
chr2 (1-249)||(38253709-38253957)
chr2 (1-249)||(43155585-43155833)
chr2 (246-402)||(38254707-38254859)
chr2 (246-402)||(43154684-43154835)
chr2 (44-241)||(39651619-39651816)
chr2 (252-391)||(8158613-8158748)
chr2 (328-388)||(39648761-39648821)
[»] chr1 (7 HSPs)
chr1 (1-249)||(11472909-11473157)
chr1 (246-402)||(28246892-28247044)
chr1 (246-402)||(11472007-11472159)
chr1 (246-402)||(50026757-50026909)
chr1 (32-249)||(10466174-10466391)
chr1 (32-249)||(43735826-43736043)
chr1 (32-249)||(7282776-7282993)
[»] chr5 (3 HSPs)
chr5 (1-249)||(25381020-25381268)
chr5 (246-402)||(25380113-25380257)
chr5 (252-391)||(17514725-17514860)
[»] chr6 (4 HSPs)
chr6 (1-249)||(19308585-19308833)
chr6 (1-249)||(10124898-10125146)
chr6 (246-402)||(19309583-19309735)
chr6 (246-402)||(10125790-10125942)
[»] chr4 (3 HSPs)
chr4 (1-249)||(26281575-26281824)
chr4 (336-402)||(48793475-48793541)
chr4 (252-396)||(26282576-26282716)
[»] chr7 (2 HSPs)
chr7 (246-402)||(22491071-22491223)
chr7 (252-393)||(37163593-37163730)
[»] chr8 (1 HSPs)
chr8 (32-249)||(25861616-25861833)
[»] chr3 (1 HSPs)
chr3 (32-249)||(5910145-5910362)


Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 38253709 - 38253957
Alignment:
Q  1 atttgtcatgaatattaaatttgtggatcatgtcaaaccaaagtttctcaaaatctgcttcaatgtcaatatcatacatgcattttttgatatcactaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38253709 atttgtcatgaatattaaatttgtggatcatgtcaaaccaaagtttctcaaaatctgcttcaatgtcaatatcatacatgcattttttgatatcactaag 38253808  T
Q  101 caaagaagatcctcccttcatcacgttcccaagatgtttaactccattttgtaacaaatgccatgtgcataaaccatgatgagtctcgggcatcacatct 200  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38253809 caaagaagatcctcccttcatcatgttcccaagatgtttaactccattttgtaacaaatgccatgtgcataaaccatgatgagtctcgggcatcacatct 38253908  T
Q  201 gcaactgcccttgccattgcttgatcttggtcagtgaagatcgtctttg 249  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  38253909 gcaactgcccttgccattgcttgatcttggtcagtgaagatcgtctttg 38253957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 43155833 - 43155585
Alignment:
Q  1 atttgtcatgaatattaaatttgtggatcatgtcaaaccaaagtttctcaaaatctgcttcaatgtcaatatcatacatgcattttttgatatcactaag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  43155833 atttgtcatgaatattaaatttgtggatcatgtcaaaccaaagtttctcaaaatttgcttcaatgtcaatatcatacatgcattttttgatatcactaag 43155734  T
Q  101 caaagaagatcctcccttcatcacgttcccaagatgtttaactccattttgtaacaaatgccatgtgcataaaccatgatgagtctcgggcatcacatct 200  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43155733 caaagaagatcctcccttcatcatgttcccaagatgtttaactccattttgtaacaaatgccatgtgcataaaccatgatgagtctcgggcatcacatct 43155634  T
Q  201 gcaactgcccttgccattgcttgatcttggtcagtgaagatcgtctttg 249  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  43155633 gcaactgcccttgccattgcttgatcttggtcagtgaagatcgtctttg 43155585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 246 - 402
Target Start/End: Original strand, 38254707 - 38254859
Alignment:
Q  246 tttgcgaaacgtactctaactccgaagcccacacggaaactatctataagcaagccaaaacttattagcctcttccatagaatcaaatcccattccaatc 345  Q
    |||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38254707 tttgcgaaacgtactctaactccgaagcccacacggaaactat----aagcaagccaaaacttattagcctcttccatagaatcaaatcccattccaatc 38254802  T
Q  346 tttggtttccaatcaacatctgaagatgccatatttgatcaaactatccaaagaacc 402  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  38254803 tttggtttccaatcaacatctgaagatgtcatatttgatcaaactatccaaagaacc 38254859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 246 - 402
Target Start/End: Complemental strand, 43154835 - 43154684
Alignment:
Q  246 tttgcgaaacgtactctaactccgaagcccacacggaaactatctataagcaagccaaaacttattagcctcttccatagaatcaaatcccattccaatc 345  Q
    |||||||||||||||||||||||||||||||||||||||||||    |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  43154835 tttgcgaaacgtactctaactccgaagcccacacggaaactat----aagcaagc-aaaacttattagcctcttccatagaatcaaatcccattccaatc 43154741  T
Q  346 tttggtttccaatcaacatctgaagatgccatatttgatcaaactatccaaagaacc 402  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  43154740 tttggtttccaatcaacatctgaagatgtcatatttgatcaaactatccaaagaacc 43154684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 44 - 241
Target Start/End: Complemental strand, 39651816 - 39651619
Alignment:
Q  44 tttctcaaaatctgcttcaatgtcaatatcatacatgcattttttgatatcactaagcaaagaagatcctcccttcatcacgttcccaagatgtttaact 143  Q
    |||||||||||| |||||||| ||||||||||||||||| | ||||||||| || |||||| ||  |||||| ||||||| | |||||||||||||||||    
T  39651816 tttctcaaaatccgcttcaatctcaatatcatacatgcactctttgatatctcttagcaaaaaacttcctccattcatcaagctcccaagatgtttaact 39651717  T
Q  144 ccattttgtaacaaatgccatgtgcataaaccatgatgagtctcgggcatcacatctgcaactgcccttgccattgcttgatcttggtcagtgaagat 241  Q
    ||||| || ||||| ||||||||||||||||||||||||||||| |||||||||||| ||| |||| | |||||| ||||| |||||| |||||||||    
T  39651716 ccattctgaaacaagtgccatgtgcataaaccatgatgagtctcaggcatcacatcttcaagtgccgtggccattccttgagcttggttagtgaagat 39651619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 252 - 391
Target Start/End: Original strand, 8158613 - 8158748
Alignment:
Q  252 aaacgtactctaactccgaagcccacacggaaactatctataagcaagccaaaacttattagcctcttccatagaatcaaatcccattccaatctttggt 351  Q
    ||||||||||||| ||||||||||||||| |||| ||    || |||||||||| |  |||||||||||||||  ||||||||||||||||| || |||     
T  8158613 aaacgtactctaattccgaagcccacacgtaaaccat----aaacaagccaaaattgtttagcctcttccatattatcaaatcccattccaacctctggc 8158708  T
Q  352 ttccaatcaacatctgaagatgccatatttgatcaaacta 391  Q
    ||||||||||||| || |||||| || |||||||||||||    
T  8158709 ttccaatcaacatttgtagatgctatgtttgatcaaacta 8158748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 328 - 388
Target Start/End: Complemental strand, 39648821 - 39648761
Alignment:
Q  328 tcaaatcccattccaatctttggtttccaatcaacatctgaagatgccatatttgatcaaa 388  Q
    |||||| |||||||||   |||| ||||||||||||| |||||||| ||| ||||||||||    
T  39648821 tcaaattccattccaagtcttggcttccaatcaacatttgaagatgtcatgtttgatcaaa 39648761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 11473157 - 11472909
Alignment:
Q  1 atttgtcatgaatattaaatttgtggatcatgtcaaaccaaagtttctcaaaatctgcttcaatgtcaatatcatacatgcattttttgatatcactaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11473157 atttgtcatgaatattaaatttgtggatcatgtcaaaccaaagtttctcaaaatctgcttcaatgtcaatatcatacatgcattttttgatatcactaag 11473058  T
Q  101 caaagaagatcctcccttcatcacgttcccaagatgtttaactccattttgtaacaaatgccatgtgcataaaccatgatgagtctcgggcatcacatct 200  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11473057 caaagaagatcctcccttcatcatgttcccaagatgtttaactccattttgtaacaaatgccatgtgcataaaccatgatgagtctcgggcatcacatct 11472958  T
Q  201 gcaactgcccttgccattgcttgatcttggtcagtgaagatcgtctttg 249  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  11472957 gcaactgcccttgccattgcttgatcttggtcagtgaagatcgtctttg 11472909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 246 - 402
Target Start/End: Original strand, 28246892 - 28247044
Alignment:
Q  246 tttgcgaaacgtactctaactccgaagcccacacggaaactatctataagcaagccaaaacttattagcctcttccatagaatcaaatcccattccaatc 345  Q
    ||||||||||||||||||||||| |||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28246892 tttgcgaaacgtactctaactccaaagcccacacggaaactat----aagcaagccaaaacttattagcctcttccatagaatcaaatcccattccaatc 28246987  T
Q  346 tttggtttccaatcaacatctgaagatgccatatttgatcaaactatccaaagaacc 402  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28246988 tttggtttccaatcaacatctgaagatgccatatttgatcaaactatccaaagaacc 28247044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 246 - 402
Target Start/End: Complemental strand, 11472159 - 11472007
Alignment:
Q  246 tttgcgaaacgtactctaactccgaagcccacacggaaactatctataagcaagccaaaacttattagcctcttccatagaatcaaatcccattccaatc 345  Q
    ||||||||||||||||||||||||||||||||||| |||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11472159 tttgcgaaacgtactctaactccgaagcccacacgaaaactat----aagcaagccaaaacttattagcctcttccatagaatcaaatcccattccaatc 11472064  T
Q  346 tttggtttccaatcaacatctgaagatgccatatttgatcaaactatccaaagaacc 402  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  11472063 tttggtttccaatcaacatctgaagatgtcatatttgatcaaactatccaaagaacc 11472007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 246 - 402
Target Start/End: Original strand, 50026757 - 50026909
Alignment:
Q  246 tttgcgaaacgtactctaactccgaagcccacacggaaactatctataagcaagccaaaacttattagcctcttccatagaatcaaatcccattccaatc 345  Q
    |||||||||||||||||||||||||||||||||| ||||||||    ||||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  50026757 tttgcgaaacgtactctaactccgaagcccacacagaaactat----aagcaagccaaaatttattagcctcttccatagaatcaaatctcattccaatc 50026852  T
Q  346 tttggtttccaatcaacatctgaagatgccatatttgatcaaactatccaaagaacc 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  50026853 tttggtttccaatcaacatctgaagatgccatatttgatcaaactatccaaggaacc 50026909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 32 - 249
Target Start/End: Original strand, 10466174 - 10466391
Alignment:
Q  32 gtcaaaccaaagtttctcaaaatctgcttcaatgtcaatatcatacatgcattttttgatatcactaagcaaagaagatcctcccttcatcacgttccca 131  Q
    ||||||||||  |||||||||||||||||||||| |||| ||||||||||| ||  ||| |||  | |||||||||| ||||  |||||||  ||| |||    
T  10466174 gtcaaaccaagctttctcaaaatctgcttcaatgccaatctcatacatgcacttgctgaaatctgttagcaaagaagctcctttcttcatcctgtttcca 10466273  T
Q  132 agatgtttaactccattttgtaacaaatgccatgtgcataaaccatgatgagtctcgggcatcacatctgcaactgcccttgccattgcttgatcttggt 231  Q
    |||||||||| |||||| || |||||||||||||||||||||||||| |||||||| |||||||| ||| ||| |||||| | |||||||||||||||||    
T  10466274 agatgtttaattccattctgcaacaaatgccatgtgcataaaccatggtgagtctcaggcatcacttcttcaagtgccctagacattgcttgatcttggt 10466373  T
Q  232 cagtgaagatcgtctttg 249  Q
    ||||||||||||||||||    
T  10466374 cagtgaagatcgtctttg 10466391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 32 - 249
Target Start/End: Original strand, 43735826 - 43736043
Alignment:
Q  32 gtcaaaccaaagtttctcaaaatctgcttcaatgtcaatatcatacatgcattttttgatatcactaagcaaagaagatcctcccttcatcacgttccca 131  Q
    ||||||||||  |||||||||||||||||||||| |||| ||||||||||| ||  ||| |||  | |||||||||| ||||  |||||||  ||| |||    
T  43735826 gtcaaaccaagctttctcaaaatctgcttcaatgccaatctcatacatgcacttgctgaaatctgttagcaaagaagctcctttcttcatcctgtttcca 43735925  T
Q  132 agatgtttaactccattttgtaacaaatgccatgtgcataaaccatgatgagtctcgggcatcacatctgcaactgcccttgccattgcttgatcttggt 231  Q
    |||||||||| |||||| || |||||||||||||||||||||||||| |||||||| |||||||| ||| ||| |||||| | |||||||||||||||||    
T  43735926 agatgtttaattccattctgcaacaaatgccatgtgcataaaccatggtgagtctcaggcatcacttcttcaagtgccctagacattgcttgatcttggt 43736025  T
Q  232 cagtgaagatcgtctttg 249  Q
    ||||||||||||||||||    
T  43736026 cagtgaagatcgtctttg 43736043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 32 - 249
Target Start/End: Original strand, 7282776 - 7282993
Alignment:
Q  32 gtcaaaccaaagtttctcaaaatctgcttcaatgtcaatatcatacatgcattttttgatatcactaagcaaagaagatcctcccttcatcacgttccca 131  Q
    ||||||||||  |||||||||||||||||||||| |||| ||||||||||| ||  ||| |||  | |||||||||| || |  |||||||  ||| |||    
T  7282776 gtcaaaccaagctttctcaaaatctgcttcaatgccaatctcatacatgcacttgctgaaatctgttagcaaagaagctcatttcttcatcctgtttcca 7282875  T
Q  132 agatgtttaactccattttgtaacaaatgccatgtgcataaaccatgatgagtctcgggcatcacatctgcaactgcccttgccattgcttgatcttggt 231  Q
    |||||||||| |||||| || |||||||||||||||||||||||||| ||||| || |||||||| ||| ||| |||||| | |||||||||||||||||    
T  7282876 agatgtttaattccattctgcaacaaatgccatgtgcataaaccatggtgagtatcaggcatcacttcttcaagtgccctagacattgcttgatcttggt 7282975  T
Q  232 cagtgaagatcgtctttg 249  Q
    ||||||||||||||||||    
T  7282976 cagtgaagatcgtctttg 7282993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 25381268 - 25381020
Alignment:
Q  1 atttgtcatgaatattaaatttgtggatcatgtcaaaccaaagtttctcaaaatctgcttcaatgtcaatatcatacatgcattttttgatatcactaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25381268 atttgtcatgaatattaaatttgtggatcatgtcaaaccaaagtttctcaaaatctgcttcaatgtcaatatcatacatgcattttttgatatcactaag 25381169  T
Q  101 caaagaagatcctcccttcatcacgttcccaagatgtttaactccattttgtaacaaatgccatgtgcataaaccatgatgagtctcgggcatcacatct 200  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25381168 caaagaagatccttccttcatcacgttcccaagatgtttaactccattttgtaacaaatgccatgtgcataaaccatgatgagtctcgggcatcacatct 25381069  T
Q  201 gcaactgcccttgccattgcttgatcttggtcagtgaagatcgtctttg 249  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  25381068 gcaactgccctttccattgcttgatcttggtcagtgaagatcgtctttg 25381020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 246 - 402
Target Start/End: Complemental strand, 25380257 - 25380113
Alignment:
Q  246 tttgcgaaacgtactctaactccgaagcccacacggaaactatctataagcaagccaaaacttattagcctcttccatagaatcaaatcccattccaatc 345  Q
    ||||||||||||||||||||||| |||||||||||||||||||    ||||||||||||||        |||||||||||||||||||||||||||||||    
T  25380257 tttgcgaaacgtactctaactccaaagcccacacggaaactat----aagcaagccaaaac--------ctcttccatagaatcaaatcccattccaatc 25380170  T
Q  346 tttggtttccaatcaacatctgaagatgccatatttgatcaaactatccaaagaacc 402  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  25380169 tttggtttccaatcaacatttgaagatgacatatttgatcaaactatccaaagaacc 25380113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 252 - 391
Target Start/End: Original strand, 17514725 - 17514860
Alignment:
Q  252 aaacgtactctaactccgaagcccacacggaaactatctataagcaagccaaaacttattagcctcttccatagaatcaaatcccattccaatctttggt 351  Q
    ||||||||||||| ||||||| ||||||| |||| ||    ||||||||||||| |  |||||||||||||||  ||||||||||||||||| || ||      
T  17514725 aaacgtactctaattccgaagtccacacgtaaaccat----aagcaagccaaaattgtttagcctcttccatattatcaaatcccattccaacctctgac 17514820  T
Q  352 ttccaatcaacatctgaagatgccatatttgatcaaacta 391  Q
    ||||||||||||| || |||| |||| |||||||||||||    
T  17514821 ttccaatcaacatttgtagataccatgtttgatcaaacta 17514860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 233; Significance: 1e-128; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 19308585 - 19308833
Alignment:
Q  1 atttgtcatgaatattaaatttgtggatcatgtcaaaccaaagtttctcaaaatctgcttcaatgtcaatatcatacatgcattttttgatatcactaag 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  19308585 atttgtcatgaatattaaatttatggatcatgtcaaaccaaagtttctcaaaaactgcttcaatgtcaatatcatacatgcattttttgatatcaataag 19308684  T
Q  101 caaagaagatcctcccttcatcacgttcccaagatgtttaactccattttgtaacaaatgccatgtgcataaaccatgatgagtctcgggcatcacatct 200  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19308685 caaagaagatcctcccttcatcatgttcccaagatgtttaactccattttgtaacaaatgccatgtgcataaaccatgatgagtctcgggcatcacatct 19308784  T
Q  201 gcaactgcccttgccattgcttgatcttggtcagtgaagatcgtctttg 249  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  19308785 gcaactgcccttgccattgcttgatcttggtcagtgaagatcgtctttg 19308833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 10124898 - 10125146
Alignment:
Q  1 atttgtcatgaatattaaatttgtggatcatgtcaaaccaaagtttctcaaaatctgcttcaatgtcaatatcatacatgcattttttgatatcactaag 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10124898 atttgtcatgaatatttaatttgtggatcatgtcaaaccaaagtttctcaaaatctgcttcaatgtcaatatcatacatgcattttttgatatcactaag 10124997  T
Q  101 caaagaagatcctcccttcatcacgttcccaagatgtttaactccattttgtaacaaatgccatgtgcataaaccatgatgagtctcgggcatcacatct 200  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  10124998 caaagaagatcctcccttcatcatgttcccaagatgtttaactccattttgtaacaaatggcatgtgcataaaccatgatgagtctcgggcatcacatct 10125097  T
Q  201 gcaactgcccttgccattgcttgatcttggtcagtgaagatcgtctttg 249  Q
    |||||||||||| |||||||||||||||||| |||||||||||||||||    
T  10125098 gcaactgcccttaccattgcttgatcttggttagtgaagatcgtctttg 10125146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 246 - 402
Target Start/End: Original strand, 19309583 - 19309735
Alignment:
Q  246 tttgcgaaacgtactctaactccgaagcccacacggaaactatctataagcaagccaaaacttattagcctcttccatagaatcaaatcccattccaatc 345  Q
    |||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19309583 tttgcgaaacgtactctaactccgaagcccacacggaaactat----aagcaagccaaaacttattagcctcttccatagaatcaaatcccattccaatc 19309678  T
Q  346 tttggtttccaatcaacatctgaagatgccatatttgatcaaactatccaaagaacc 402  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19309679 tttggtttccaatcaacatctgaagatgccatatttgatcaaactatccaaagaacc 19309735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 246 - 402
Target Start/End: Original strand, 10125790 - 10125942
Alignment:
Q  246 tttgcgaaacgtactctaactccgaagcccacacggaaactatctataagcaagccaaaacttattagcctcttccatagaatcaaatcccattccaatc 345  Q
    ||||||||||||||| |||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10125790 tttgcgaaacgtactataactccgaagcccacacggaaactat----aagcaagccaaaacttattagcctcttccatagaatcaaatcccattccaatc 10125885  T
Q  346 tttggtttccaatcaacatctgaagatgccatatttgatcaaactatccaaagaacc 402  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  10125886 tttggtttccaatcaacatctgaagatgccatatttgatcaaactatcaaaagaacc 10125942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 150; Significance: 5e-79; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 26281575 - 26281824
Alignment:
Q  1 atttgtcatgaatattaaatttgtggatcatgtcaaaccaaagtttctcaaaatctgcttcaatgtcaatatcatacatgcattttttgatatcactaag 100  Q
    |||| |||||||||||||||| || ||||| ||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||    
T  26281575 atttatcatgaatattaaattcgttgatcaagtcaaaccagactttctcaaaatatgcttcaatgtcaatatcatacatgcattttttgacatctctaag 26281674  T
Q  101 caaagaagatcctcccttcatcacgttcccaagatgtttaactccattttgtaacaaatgccatgtgcataaaccatgatgagtc-tcgggcatcacatc 199  Q
     ||| |||||||||||||||||| ||| ||| |||||||||||||| |||||||||| || ||||||||||||||||| |||||| | ||||||||||||    
T  26281675 taaaaaagatcctcccttcatcaagtttccaggatgtttaactccactttgtaacaagtgtcatgtgcataaaccatggtgagtcttggggcatcacatc 26281774  T
Q  200 tgcaactgcccttgccattgcttgatcttggtcagtgaagatcgtctttg 249  Q
    ||||| |||||||| ||||||| |||||| ||||||||||||||||||||    
T  26281775 tgcaagtgcccttgtcattgctcgatctttgtcagtgaagatcgtctttg 26281824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 336 - 402
Target Start/End: Complemental strand, 48793541 - 48793475
Alignment:
Q  336 cattccaatctttggtttccaatcaacatctgaagatgccatatttgatcaaactatccaaagaacc 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  48793541 cattccaatctttggtttccaatcaacatctgaagatgccatatttgatcaaactattcaaggaacc 48793475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 252 - 396
Target Start/End: Original strand, 26282576 - 26282716
Alignment:
Q  252 aaacgtactctaactccgaagcccacacggaaactatctataagcaagccaaaacttattagcctcttccatagaatcaaatcccattccaatctttggt 351  Q
    |||||||||||||||| ||| |||||||  |||    ||||||||||||||||| ||| |||| || ||||||  |||||||| |||| |||  |||||     
T  26282576 aaacgtactctaactctgaatcccacacataaa----ctataagcaagccaaaatttactagcatcgtccatattatcaaatctcatttcaaggtttggc 26282671  T
Q  352 ttccaatcaacatctgaagatgccatatttgatcaaactatccaa 396  Q
    || |||||||||| |||||||||||| ||||||||||||||||||    
T  26282672 ttacaatcaacatttgaagatgccatgtttgatcaaactatccaa 26282716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 120; Significance: 4e-61; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 246 - 402
Target Start/End: Original strand, 22491071 - 22491223
Alignment:
Q  246 tttgcgaaacgtactctaactccgaagcccacacggaaactatctataagcaagccaaaacttattagcctcttccatagaatcaaatcccattccaatc 345  Q
    ||||||||||||||||||||||||||||||||||  |||    |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  22491071 tttgcgaaacgtactctaactccgaagcccacacataaa----ctataagcaagccaaaacttattaacctcttccatagaatcaaataccattccaatc 22491166  T
Q  346 tttggtttccaatcaacatctgaagatgccatatttgatcaaactatccaaagaacc 402  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  22491167 tttggtttacaatcaacatctgaagatgccatatttgatcaaactatccaaagaacc 22491223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 252 - 393
Target Start/End: Complemental strand, 37163730 - 37163593
Alignment:
Q  252 aaacgtactctaactccgaagcccacacggaaactatctataagcaagccaaaacttattagcctcttccatagaatcaaatcccattccaatctttggt 351  Q
    ||||||||||||| ||||||||||||||| |||| ||    ||||||||||||| |  |||||||||||||||  |||||||| |||||||| || |||     
T  37163730 aaacgtactctaattccgaagcccacacgtaaaccat----aagcaagccaaaattgtttagcctcttccatattatcaaatctcattccaacctctggc 37163635  T
Q  352 ttccaatcaacatctgaagatgccatatttgatcaaactatc 393  Q
    ||||||||||||| || ||||||||| |||||||||||||||    
T  37163634 ttccaatcaacatttgtagatgccatgtttgatcaaactatc 37163593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 106; Significance: 8e-53; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 32 - 249
Target Start/End: Complemental strand, 25861833 - 25861616
Alignment:
Q  32 gtcaaaccaaagtttctcaaaatctgcttcaatgtcaatatcatacatgcattttttgatatcactaagcaaagaagatcctcccttcatcacgttccca 131  Q
    ||||||||||  ||||||||||||||||||||||||||| ||||||||||| ||  ||| |||  | |||||||||  ||||  |||||||  ||| |||    
T  25861833 gtcaaaccaagctttctcaaaatctgcttcaatgtcaatctcatacatgcacttgctgaaatctgttagcaaagaatctcctttcttcatcctgtttcca 25861734  T
Q  132 agatgtttaactccattttgtaacaaatgccatgtgcataaaccatgatgagtctcgggcatcacatctgcaactgcccttgccattgcttgatcttggt 231  Q
    |||||||||| |||||| || ||||| |||||||||||||||||||| |||||||| |||||||| ||| ||| |||||| | |||||||||||||||||    
T  25861733 agatgtttaattccattctgcaacaagtgccatgtgcataaaccatggtgagtctcaggcatcacttcttcaagtgccctagacattgcttgatcttggt 25861634  T
Q  232 cagtgaagatcgtctttg 249  Q
    ||||||||||||||||||    
T  25861633 cagtgaagatcgtctttg 25861616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 32 - 249
Target Start/End: Complemental strand, 5910362 - 5910145
Alignment:
Q  32 gtcaaaccaaagtttctcaaaatctgcttcaatgtcaatatcatacatgcattttttgatatcactaagcaaagaagatcctcccttcatcacgttccca 131  Q
    ||||||||||  |||||||||||||||||||||| |||| ||||||||||| ||  ||| |||  | |||||||||| ||||  |||||||  ||| |||    
T  5910362 gtcaaaccaagctttctcaaaatctgcttcaatgccaatctcatacatgcacttgctgaaatctgttagcaaagaagctcctttcttcatcctgtttcca 5910263  T
Q  132 agatgtttaactccattttgtaacaaatgccatgtgcataaaccatgatgagtctcgggcatcacatctgcaactgcccttgccattgcttgatcttggt 231  Q
    |||||||||| |||||| || ||||| |||||||||||||||||||| |||||||| |||||||| ||| ||| |||||| | ||||| |||||||||||    
T  5910262 agatgtttaattccattctgcaacaagtgccatgtgcataaaccatggtgagtctcaggcatcacttcttcaagtgccctagacattgtttgatcttggt 5910163  T
Q  232 cagtgaagatcgtctttg 249  Q
    ||||||||||||||||||    
T  5910162 cagtgaagatcgtctttg 5910145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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