View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2605_low_16 (Length: 519)
Name: NF2605_low_16
Description: NF2605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2605_low_16 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 440; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 1 - 500
Target Start/End: Original strand, 8352545 - 8353042
Alignment:
| Q |
1 |
aaacaattcaaatccatattctatgagctgaattaatatagtaattgagctcaagaggttaacgagcttctccaatgacaaattgtttcagagaacctga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8352545 |
aaacaattcaaatccatattctatgagctgaattaatatagtaattgagctcaagaggttaacgagcttctccaatgacaaattgtttcagagaacctga |
8352644 |
T |
|
| Q |
101 |
ctttaattcttgatggaacaattttcagttagactttatttacctctgaccaaactctgaaataccagggtccctttttctttagagctagaggattaac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
8352645 |
ctttaattcttgatggaacaattttcagttagactttatttacctctgaccaaactctgaaataccagggtcc-tttttctttagagctagaggattaac |
8352743 |
T |
|
| Q |
201 |
acacnnnnnnnnccctaaattttggagaaaaattgaaattactgtcagacttcatagttaattagatagcattgtaacaactatatacttatatcaattt |
300 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
8352744 |
aca-aaaaaaaaccctaaattttggagaaaaattgaaattactgtcagacttcatagttaattagataacattgtaacgactatatacttatatcaattt |
8352842 |
T |
|
| Q |
301 |
atttgttaatcatacagcttgtatcaaatgacaatttcagtagcgtttatcatcgggtgttatcaaatcataaaggcccaagagtttctgtagctgcctt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8352843 |
atttgttaatcatacagcttgtatcaaatgacaatttcagtagtgtttatcatcgtgtgttatcaaatcataaaggcccaagagtttctgtagctgcctt |
8352942 |
T |
|
| Q |
401 |
ctttggaacttcccatgatctagataaagcttcatcaaagatttatggtcctattaaagatttgttctcagaagagaaccccccaatctatagagatatt |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
8352943 |
ctttggaacttcccatgatctagataaagcttcatcaaagatttatggtcctattaaagatttgttctcagaagagaaccccccaatctatacagatatt |
8353042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 433 - 500
Target Start/End: Original strand, 41242331 - 41242398
Alignment:
| Q |
433 |
catcaaagatttatggtcctattaaagatttgttctcagaagagaaccccccaatctatagagatatt |
500 |
Q |
| |
|
||||||| |||||||||| || || || ||||| |||||||| ||||| |||||||||||||||||| |
|
|
| T |
41242331 |
catcaaaagtttatggtccaataaaggaattgttatcagaagaaaaccctccaatctatagagatatt |
41242398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 500
Target Start/End: Complemental strand, 25221751 - 25221260
Alignment:
| Q |
1 |
aaacaattcaaatccatattctatgagctgaattaatatagtaattgagctcaagaggttaacgagcttctccaatgacaaattgtttcagagaacctga |
100 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||| || |||||||||||||| ||||||||| ||| ||||||| ||||||||| |||| || | |
|
|
| T |
25221751 |
aaacaattcaa-tccatataaaatgagctgaattaac-taataattgagctcaagtagttaacgagtttcatcaatgacgaattgtttcgaagaatctca |
25221654 |
T |
|
| Q |
101 |
ctttaattcttgatggaacaattttcagttagactttatttacctctgaccaaactctgaaataccagggtccc--tttttctttagagctagaggatta |
198 |
Q |
| |
|
|||| ||||||||||||||| |||| ||| | |||||| |||||||||||||| || ||||||||| || |||| ||||| |||||||||||||| ||| |
|
|
| T |
25221653 |
ctttgattcttgatggaacagtttttagtcaaactttacttacctctgaccaagctttgaaataccgggttccccttttttttttagagctagagggtta |
25221554 |
T |
|
| Q |
199 |
acacacnnnnnnnnccctaaattttggagaaaaattgaaattactgtcagacttcatagttaattagatagcattgtaacaactatatacttatatcaat |
298 |
Q |
| |
|
| | | || |||||||||||||| ||||||||||| ||| |||||||||||||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
25221553 |
aaaaaaaaa-------ctgaattttggagaaaa-ttgaaattactatcatacttcatagttaattagatatcattgtaacgactatatacttatatcaat |
25221462 |
T |
|
| Q |
299 |
ttatttgttaatcatacagcttgtatcaaatgacaatttcagtagcgtttatcatcgggtgttatcaaatcataaaggcccaagagtttctgtagctgcc |
398 |
Q |
| |
|
||||||||||||| | |||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25221461 |
ttatttgttaatcgtgcagcttgtgtcaaatgacaatttcagtagtgtttatcatcgggtactatcaaatcataaaggcccaagagtttctgtagctgcc |
25221362 |
T |
|
| Q |
399 |
ttctttggaacttcccatgatctagataaagcttcatcaaagatttatggtcctattaaagatttgttctcagaagagaaccccccaatctatagagata |
498 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
25221361 |
ttctttggaacttctcatgatcttgataaagcttcatcaatgatttatggtcctattaaagaattggtctcagaagagaacccaccaatctatagagata |
25221262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 23 - 498
Target Start/End: Original strand, 26172716 - 26173184
Alignment:
| Q |
23 |
atgagctgaattaatatagtaattgagctcaagaggttaacgagcttctccaatgacaaattgtttcagagaacctgactttaattcttgatggaacaat |
122 |
Q |
| |
|
||||||| |||||| |||||||||| ||||| |||||| ||| ||| |||||| |||| ||| || || |||||||| ||| ||||| ||||||| |
|
|
| T |
26172716 |
atgagctaaattaaccaagtaattgagttcaagtggttaatgagtttcatcaatgatgaattattttggataatctgactttgatttttgatagaacaat |
26172815 |
T |
|
| Q |
123 |
tttcagttagactttatttacctctgaccaaactctgaaataccagggtccctttttctttagagctagaggattaacacacnnnnnnnnccctaaattt |
222 |
Q |
| |
|
||| ||| | |||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||| | | ||||| |
|
|
| T |
26172816 |
ttttagtcatacttcatttacctctgaccaaactcaaaaataccagggtccctttttctttagaactagagggttaaaaaaaaaag---------aattt |
26172906 |
T |
|
| Q |
223 |
tggagaaaaat-tgaaattactgtcagacttcatagttaattagatagcattgtaacaactatatacttatatcaatttatttgttaatcat-acagctt |
320 |
Q |
| |
|
|| | ||||| |||||||| ||||| | |||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
26172907 |
tgtataaaaaaatgaaattattgtcataattcatagttaattagatatcattgtaacgaatatatacttatatcaatttatttgttaatctttacagctt |
26173006 |
T |
|
| Q |
321 |
gtatcaaatgacaatttcagtagcgtttatcatcgggtgttatcaaatcataaaggcccaagagtttctgtagctgccttctttggaacttcccatgatc |
420 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
26173007 |
atatcaaatgacaattttagtagtgtttatcatcgggtgttatcaaatcataaaggcccaagagtttctgtagctgccttctttggaaattctcatgatc |
26173106 |
T |
|
| Q |
421 |
tagataaagcttcatcaaagatttatggtcctattaaagatttgttctcagaagagaaccccccaatctatagagata |
498 |
Q |
| |
|
| || ||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
26173107 |
tggagaaagcttcatcaacgatttatggtcctattaaagaattgttatcagaagagaacccaccaatctatagagata |
26173184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 282 - 408
Target Start/End: Original strand, 26397517 - 26397643
Alignment:
| Q |
282 |
tatatacttatatcaatttatttgttaatcatacagcttgtatcaaatgacaatttcagtagcgtttatcatcgggtgttatcaaatcataaaggcccaa |
381 |
Q |
| |
|
|||||||||||| ||||||||||| ||| |||||||| || ||||||||||||| || |||| |||||| ||||||| || | ||||||| |||| |
|
|
| T |
26397517 |
tatatacttatagaaatttatttgtcaatgttacagcttataacaaatgacaattttgtcagtgtttttcatcgagtgttattaagtgataaaggaccaa |
26397616 |
T |
|
| Q |
382 |
gagtttctgtagctgccttctttggaa |
408 |
Q |
| |
|
|||||||||||||| |||||||||| |
|
|
| T |
26397617 |
gagtttctgtagctaatttctttggaa |
26397643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 433 - 500
Target Start/End: Original strand, 28130712 - 28130779
Alignment:
| Q |
433 |
catcaaagatttatggtcctattaaagatttgttctcagaagagaaccccccaatctatagagatatt |
500 |
Q |
| |
|
||||||| |||||||||| || || || ||||| |||||||| ||||| |||||||||||||||||| |
|
|
| T |
28130712 |
catcaaaagtttatggtccaataaaggaattgttatcagaagaaaaccctccaatctatagagatatt |
28130779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University