View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2605_low_17 (Length: 515)
Name: NF2605_low_17
Description: NF2605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2605_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 351; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 116 - 503
Target Start/End: Original strand, 32536034 - 32536422
Alignment:
| Q |
116 |
tatcactgctactttgagaaatctgcatgggtg--attgtgtttgttgtatgctaagtgtttataattcgactttatcatcacgtaggtagaaaaattat |
213 |
Q |
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| T |
32536034 |
tatcactgctactttgagaaatctgcatgcgtgtgattgtgtttgttgtatgctaagggtttataattcgactttatcatcacgtaggtcgaaaaattat |
32536133 |
T |
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| Q |
214 |
tttatgaattatgaatatgtagggatggatcaaagaattttgattaatggagacgaaattatatactataaatgtttttgtataaaagatattattgaca |
313 |
Q |
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| T |
32536134 |
tttatgaattatgaat-tgtagggatggatcaaagaattttgattaatggagacgaaattatatactataaatgtttttgtataaaagatattattgaca |
32536232 |
T |
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| Q |
314 |
tgttataatcaaaatattgttaagtcgcaaatagacaattcaattgaggaggtgagtgacaatgaaagagttctaactagaatatttgagactcaaactt |
413 |
Q |
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| T |
32536233 |
tgttataatcaaaatattgttaagtcgcaaatagacaattcaattgaggaggtgagtgacaatgaaagagttctaactagaatatttgagactcaaactt |
32536332 |
T |
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| Q |
414 |
tgaagacaaacacaatctactaagttgttaaatatattattcgtaaaaaacatgtttcaactaaaatttagagattacaatatatatatg |
503 |
Q |
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| T |
32536333 |
tgaagacaaacacaatctactaagttgttaaatatgttattcgtaaaaaacatgtttaaactaaaatttagagattacaatatatatatg |
32536422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 116 - 232
Target Start/End: Complemental strand, 31447331 - 31447215
Alignment:
| Q |
116 |
tatcactgctactttgagaaatctgcatgggtgattgtgtttgttgtatgctaagtgtttataattcgactttatcatcacgtaggtagaaaaattattt |
215 |
Q |
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| T |
31447331 |
tatcactgctagtttgagaaatatacatgggtgattgtgtttgttgtatgctaagtgtttataattcgactttatcgtcacgtaggtagaaaaattattt |
31447232 |
T |
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| Q |
216 |
tatgaattatgaatatg |
232 |
Q |
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|||| |||||||||||| |
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| T |
31447231 |
tatggattatgaatatg |
31447215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 11 - 115
Target Start/End: Original strand, 32535903 - 32536007
Alignment:
| Q |
11 |
ataatactatagtttatgtacacactatttttatggcttccatcaataaaacttagaaataaatagtaattgaaaaccgtatcattattggtgttctatt |
110 |
Q |
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| T |
32535903 |
ataacactatagtttatgtacacactatttttatggcttccatcaataaaacttagaaataaatagtaattgaaaaccgtatcattattggtgttcaatt |
32536002 |
T |
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| Q |
111 |
atatg |
115 |
Q |
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||||| |
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| T |
32536003 |
atatg |
32536007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 33 - 98
Target Start/End: Complemental strand, 31447437 - 31447372
Alignment:
| Q |
33 |
cactatttttatggcttccatcaataaaacttagaaataaatagtaattgaaaaccgtatcattat |
98 |
Q |
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| T |
31447437 |
cactatttttatggcttccatcaatgatagttagaaataaatactaatggaaaaccatatctttat |
31447372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 258 - 493
Target Start/End: Complemental strand, 7467048 - 7466817
Alignment:
| Q |
258 |
taatggagacgaaattata---tactataaatgtttttgtataaaagatattattgacatgttataatcaaaatattgttaagtcgcaaatagacaattc |
354 |
Q |
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| T |
7467048 |
taatggggacgaaattatagtatattataaatgtttttgtataaaaggtacaatatagatgctataat--atttatcgttaaggcgcaaatagacaattc |
7466951 |
T |
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| Q |
355 |
aattgaggaggtgagtgacaatgaaa--gagttctaactagaatatttgagactcaaactttgaagacaaacacaatctactaagttgttaaatatatta |
452 |
Q |
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| T |
7466950 |
aattaaggagttaagaaataataaaaaagagttctaactagaatatttgagactcaaac--cgaagagaaacacaatccac------gttaaatatgtta |
7466859 |
T |
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| Q |
453 |
ttcgt-aaaaaacatgtttcaactaaaatttagagattacaa |
493 |
Q |
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| T |
7466858 |
tccataaaaaaacatatttcaactaaaatatagggattacaa |
7466817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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