View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2605_low_18 (Length: 511)

Name: NF2605_low_18
Description: NF2605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2605_low_18
NF2605_low_18
[»] chr3 (5 HSPs)
chr3 (16-337)||(26253931-26254237)
chr3 (80-337)||(21495876-21496127)
chr3 (16-215)||(31546953-31547151)
chr3 (45-223)||(28958021-28958198)
chr3 (16-215)||(44887486-44887684)
[»] chr4 (3 HSPs)
chr4 (16-337)||(48804543-48804863)
chr4 (98-210)||(9776969-9777081)
chr4 (16-201)||(2601583-2601766)
[»] chr6 (3 HSPs)
chr6 (16-317)||(13828157-13828446)
chr6 (265-337)||(33096195-33096267)
chr6 (124-202)||(29055114-29055192)
[»] chr7 (10 HSPs)
chr7 (16-219)||(9599739-9599941)
chr7 (16-219)||(9827310-9827512)
chr7 (16-210)||(22820077-22820270)
chr7 (265-337)||(9599380-9599453)
chr7 (265-337)||(9826951-9827024)
chr7 (48-219)||(45201216-45201386)
chr7 (30-179)||(4615802-4615950)
chr7 (16-215)||(17052991-17053189)
chr7 (155-210)||(19048181-19048236)
chr7 (279-337)||(33589169-33589227)
[»] chr1 (3 HSPs)
chr1 (16-200)||(31874297-31874480)
chr1 (99-210)||(3073337-3073448)
chr1 (92-215)||(21404420-21404543)
[»] scaffold1112 (1 HSPs)
scaffold1112 (16-210)||(1781-1974)
[»] chr8 (2 HSPs)
chr8 (25-116)||(31263528-31263618)
chr8 (158-219)||(31263425-31263486)
[»] chr5 (1 HSPs)
chr5 (124-215)||(17757551-17757642)
[»] chr2 (1 HSPs)
chr2 (89-209)||(32191049-32191169)


Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 16 - 337
Target Start/End: Complemental strand, 26254237 - 26253931
Alignment:
Q  16 atttggatgtgttgtgtgtgggttatcttgaatgaaagaaacagtcggggtcttcaaaaataaggagagcatcatccatcagttggtagagaaagtcaaa 115  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  26254237 atttggatgtgttgtgggtgggttatcttgaatgaaagaaacagtcggggtcttcaaaaataaggagagcaccatccatcagttggtagagaaagtcaaa 26254138  T
Q  116 -tacattcttttttggtggatgaaggctactgatatttccattcggcctaattttcatatgtggtattcgagcccttttgtttgtttgagcattggttag 214  Q
     ||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||            |||||||| |||||||||||    
T  26254137 ttacattc-tttttggtggatgaaggctactaatatttccattcgacctaattttcatatgtggtgtt------------tttgtttgggcattggttag 26254051  T
Q  215 cctgtatttgtgttctcattttttggaccctgtattgtgtcctctgtacgtttgaggattcttgagcacaccttgtgcttgagtatccttttgtgtttct 314  Q
    ||||||||||||||||||||||||||||  |||||| ||| |||  |||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  26254050 cctgtatttgtgttctcattttttggactatgtattctgtactc--tacgtttgaggattcttgagcacaccttgtccttaagtatccttttgtgtttct 26253953  T
Q  315 aataaattccaattttgcttgtt 337  Q
    |||| ||||| ||||||||||||    
T  26253952 aatatattcc-attttgcttgtt 26253931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 80 - 337
Target Start/End: Complemental strand, 21496127 - 21495876
Alignment:
Q  80 gagagcatcatccatcagttggtagagaaagtcaaat-acattcttttttggtggatgaaggctactgatatttccattcggcctaattttcatatgtgg 178  Q
    ||||| ||||||||| ||||||||||||||||||||| ||||||||| | ||||||||||||||||| ||| ||| ||||||||||||||||||||||||    
T  21496127 gagagtatcatccattagttggtagagaaagtcaaattacattctttct-ggtggatgaaggctactaataattcaattcggcctaattttcatatgtgg 21496029  T
Q  179 tattcgagcccttttgtttgtttgagcattggttagcctgtatttgtgttctcattttttggaccctgtattgtgtcctctgtacgtttgaggattcttg 278  Q
    | ||||||||||||||||||  || ||||||| || | ||| ||| ||| ||| |||||||||| ||||| |      | || || ||||||| ||||||    
T  21496028 tgttcgagcccttttgtttgcgtgggcattggataacatgtttttatgtactctttttttggactctgtaat------tgtgcacttttgaggtttcttg 21495935  T
Q  279 agcacaccttgtgcttgagtatccttttgtgtttctaataaattccaattttgcttgtt 337  Q
    |||||||||||||||| || |||||||||||||||||||| |||||| |||||||||||    
T  21495934 agcacaccttgtgcttaaggatccttttgtgtttctaatatattccatttttgcttgtt 21495876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 16 - 215
Target Start/End: Complemental strand, 31547151 - 31546953
Alignment:
Q  16 atttggatgtgttgtgtgtgggttatcttgaatgaaagaaacagtcggggtcttcaaaaataaggagagcatcatccatcagttggtagagaaagtcaaa 115  Q
    |||||| |||| | |||| ||||||| | || |||||||||||| | |||||||||||||||||||    | | | || || |||||||||||| |||||    
T  31547151 atttggttgtgctctgtgggggttatgtggagtgaaagaaacag-cagggtcttcaaaaataaggaccataccgttcaccaattggtagagaaaatcaaa 31547053  T
Q  116 t-acattcttttttggtggatgaaggctactgatatttccattcggcctaattttcatatgtggtattcgagcccttttgtttgtttgagcattggttag 214  Q
    | ||| ||||||| ||||||||||| ||||| || |||| || ||   |||||||||||||||||  |  |||||||||||||||||| | ||||| |||    
T  31547052 ttacagtcttttt-ggtggatgaagactactaatttttctatccgtaataattttcatatgtggtggttaagcccttttgtttgtttgggtattggctag 31546954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 45 - 223
Target Start/End: Original strand, 28958021 - 28958198
Alignment:
Q  45 gaatgaaagaaacagtcggggtcttcaaaaataaggagagcatcatccatcagttggtagagaaagtcaaa-tacattcttttttggtggatgaaggcta 143  Q
    |||||||||||| |||| || |||||| | |||| ||||||||| ||||||| |||||||||||||| ||| |||||||  ||||| | ||||||| |      
T  28958021 gaatgaaagaaatagtcagg-tcttcagagataaagagagcatcctccatcaattggtagagaaagttaaattacattc-cttttgatagatgaagacgt 28958118  T
Q  144 ctgatatttccattcggcctaattttcatatgtggtattcgagcccttttgtttgtttgagcattggttagcctgtattt 223  Q
     | ||||||  ||||||||||| ||| |||||||||  |||| |  |||||||||||||  |||||| || |||||||||    
T  28958119 ttaatatttatattcggcctaacttttatatgtggtgatcgaacttttttgtttgtttggacattggctaacctgtattt 28958198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 215
Target Start/End: Complemental strand, 44887684 - 44887486
Alignment:
Q  16 atttggatgtgttgtgtgtgggttatcttgaatgaaagaaacagtcggggtcttcaaaaataaggagagcatcatccatcagttggtagagaaagtcaaa 115  Q
    |||||| |||| | |||| ||||||| | || |||||||||||| | |||| ||||||||||||||    | | | || || |||||||||||| |||||    
T  44887684 atttggttgtgctctgtgggggttatgtggagtgaaagaaacag-cagggttttcaaaaataaggaccataccgttcaccaattggtagagaaaatcaaa 44887586  T
Q  116 t-acattcttttttggtggatgaaggctactgatatttccattcggcctaattttcatatgtggtattcgagcccttttgtttgtttgagcattggttag 214  Q
    | ||| ||||||| ||||||||||| ||||| || |||| || ||   |||||||||||||||||  |  |||||||||||||||||| | ||| |||||    
T  44887585 ttacagtcttttt-ggtggatgaagactactaatttttctatccgtaataattttcatatgtggtggttaagcccttttgtttgtttgggtatttgttag 44887487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 171; Significance: 1e-91; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 16 - 337
Target Start/End: Complemental strand, 48804863 - 48804543
Alignment:
Q  16 atttggatgtgttgtgtgtgggttatcttgaatgaaagaaacagtcggggtcttcaaaaataaggagagcatcatccatcagttggtagagaaagtcaaa 115  Q
    ||||||||||||| |||||  ||||| | |||||||||||||||||||| |||||||||| |||||||| | |||||||||||||||||||||||| |||    
T  48804863 atttggatgtgttatgtgtacgttatatggaatgaaagaaacagtcggg-tcttcaaaaacaaggagagtaccatccatcagttggtagagaaagttaaa 48804765  T
Q  116 ta-cattcttttttggtggatgaaggctactgatatttccattcggcctaattttcatatgtggtattcgagcccttttgtttgtttgagcattggttag 214  Q
    |  |||||||| | ||||||||||||||||| |||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||  |||| |||||    
T  48804764 ttgcattctttct-ggtggatgaaggctactaatatttccattcagcctaattttcatatgtggtgttctagcccttttgtttgtttggccatttgttag 48804666  T
Q  215 cctgtatttgtgttctcattttttggaccctgtattgtgtcctctgtacgtttgaggattcttgagcacaccttgtgcttgagtatccttttgtgtttct 314  Q
    | ||| ||||||| ||| |||||||||| ||||||||||| || ||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||    
T  48804665 cttgtttttgtgtactcgttttttggactctgtattgtgtactttgtacttttgaggattcttgagcaccccttgtgcttgaggatccttttgtgtttct 48804566  T
Q  315 aataaattccaattttgcttgtt 337  Q
    || | |||||| |||| ||||||    
T  48804565 aaaatattccatttttccttgtt 48804543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 98 - 210
Target Start/End: Complemental strand, 9777081 - 9776969
Alignment:
Q  98 ttggtagagaaagtcaaat-acattcttttttggtggatgaaggctactgatatttccattcggcctaattttcatatgtggtattcgagcccttttgtt 196  Q
    |||||||||||| |||||| ||| ||||||| ||||||||||| ||||| ||||||| || ||   |||||||||||||||||  || ||||||||||||    
T  9777081 ttggtagagaaaatcaaattacagtcttttt-ggtggatgaagtctactaatatttctatccgtaataattttcatatgtggtggtcaagcccttttgtt 9776983  T
Q  197 tgtttgagcattgg 210  Q
    ||||||||||||||    
T  9776982 tgtttgagcattgg 9776969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 201
Target Start/End: Original strand, 2601583 - 2601766
Alignment:
Q  16 atttggatgtgttgtgtgtgggttatcttgaatgaaagaaacagtcggggtcttcaaaaataaggagagcatcatccatcagttggtagagaaagtcaaa 115  Q
    |||||| | ||||||||||| ||||| | |||||||||||| ||| ||| ||||| ||||||  ||||  | ||||||||| ||| ||||||||||||||    
T  2601583 atttggttatgttgtgtgtgagttatgtggaatgaaagaaatagtaggg-tcttcgaaaatacagagaataccatccatcatttgatagagaaagtcaaa 2601681  T
Q  116 -tacattcttttttggtggatgaaggctactgatatttccattcggcctaattttcatatgtggtattcgagcccttttgtttgttt 201  Q
     |||| || |||||| ||||||||| |   | ||||||| |||||||||||||||  ||||||||  || |||||||||||||||||    
T  2601682 ttacactc-tttttgctggatgaagac-gttaatatttctattcggcctaattttggtatgtggtggtcaagcccttttgtttgttt 2601766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 99; Significance: 1e-48; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 16 - 317
Target Start/End: Complemental strand, 13828446 - 13828157
Alignment:
Q  16 atttggatgtgttgtgtgtgggttatcttgaatgaaagaaacagtcggggtcttcaaaaataaggagagcatcatccatcagttggtagagaaagtcaaa 115  Q
    |||||||||||||||||||||||||| |  ||||||||||||||| ||| |||||||||| |||||||| | ||||||||||||||||||||||||||||    
T  13828446 atttggatgtgttgtgtgtgggttatttgaaatgaaagaaacagtaggg-tcttcaaaaacaaggagagtaccatccatcagttggtagagaaagtcaaa 13828348  T
Q  116 t-acattcttttttggtggatgaaggctactgatatttc----cattcggcctaattttcatatgtggtattcgagcccttttgtttgtttgagcattgg 210  Q
    | ||||||||| | |||| |||||||| ||| ||||||     ||||| |||||||||||||||| ||| ||||| ||||||| ||||| | ||||||||    
T  13828347 ttacattctttat-ggtg-atgaaggccactaatattttttttcattcagcctaattttcatatgcggtgttcgaacccttttctttgtataagcattgg 13828250  T
Q  211 ttagcctgtatttgtgttctcattttttggaccctgtattgtgtcctctgtacgtttgaggattcttgagcacaccttgtgcttgagtatccttttgtgt 310  Q
    |||| |||| ||||||| |||||||||              ||| || ||||| |||||||||||||||||||||||| |||||||| |||||||  |||    
T  13828249 ttagtctgtttttgtgtactcattttt--------------tgtactgtgtacttttgaggattcttgagcacaccttatgcttgaggatcctttcatgt 13828164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 265 - 337
Target Start/End: Original strand, 33096195 - 33096267
Alignment:
Q  265 tttgaggattcttgagcacaccttgtgcttgagtatccttttgtgtttctaataaattccaattttgcttgtt 337  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||    
T  33096195 tttgaggattcttgagcacaccttgtgcttgaggatccttttgtgtttctaatatattccatttttgcttgtt 33096267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 124 - 202
Target Start/End: Complemental strand, 29055192 - 29055114
Alignment:
Q  124 tttttggtggatgaaggctactgatatttccattcggcctaattttcatatgtggtattcgagcccttttgtttgtttg 202  Q
    |||||||||||||||||||||| ||||||| ||||    |||||||||||||||||  || | ||||||| ||||||||    
T  29055192 tttttggtggatgaaggctactaatatttctattcataataattttcatatgtggtggtcaaacccttttatttgtttg 29055114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 97; Significance: 2e-47; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 16 - 219
Target Start/End: Complemental strand, 9599941 - 9599739
Alignment:
Q  16 atttggatgtgttgtgtgtgggttatcttgaatgaaagaaacagtcggggtcttcaaaaataaggagagcatcatccatcagttggtagagaaagtcaaa 115  Q
    ||||||||||||||||||||||| || | |||| ||||||||||||||  | ||||| ||||||||||| | ||||||| ||||||||||||| ||||||    
T  9599941 atttggatgtgttgtgtgtgggtaatttggaataaaagaaacagtcggctt-ttcaagaataaggagagtaccatccatgagttggtagagaacgtcaaa 9599843  T
Q  116 t-acattcttttttggtggatgaaggctactgatatttccattcggcctaattttcatatgtggtattcgagcccttttgtttgtttgagcattggttag 214  Q
    | ||||||||| | ||||||||||||||||||||||| | || ||||||||||||||||||||||  |||||||||||||||||| || ||||||| |||    
T  9599842 ttacattctttct-ggtggatgaaggctactgatattacaatccggcctaattttcatatgtggtggtcgagcccttttgtttgtgtgggcattggctag 9599744  T
Q  215 cctgt 219  Q
     ||||    
T  9599743 tctgt 9599739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 16 - 219
Target Start/End: Complemental strand, 9827512 - 9827310
Alignment:
Q  16 atttggatgtgttgtgtgtgggttatcttgaatgaaagaaacagtcggggtcttcaaaaataaggagagcatcatccatcagttggtagagaaagtcaaa 115  Q
    ||||||||||||||||||||||| || | |||| ||||||||||||||  | ||||| ||||||||||| | ||||||| ||||||||||||| ||||||    
T  9827512 atttggatgtgttgtgtgtgggtaatttggaataaaagaaacagtcggctt-ttcaagaataaggagagtaccatccatgagttggtagagaacgtcaaa 9827414  T
Q  116 t-acattcttttttggtggatgaaggctactgatatttccattcggcctaattttcatatgtggtattcgagcccttttgtttgtttgagcattggttag 214  Q
    | ||||||||| | ||||||||||||||||||||||| | || ||||||||||||||||||||||  |||||||||||||||||| || ||||||| |||    
T  9827413 ttacattctttct-ggtggatgaaggctactgatattacaatccggcctaattttcatatgtggtggtcgagcccttttgtttgtgtgggcattggctag 9827315  T
Q  215 cctgt 219  Q
     ||||    
T  9827314 tctgt 9827310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 16 - 210
Target Start/End: Original strand, 22820077 - 22820270
Alignment:
Q  16 atttggatgtgttgtgtgtgggttatcttgaatgaaagaaacagtcggggtcttcaaaaataaggagagcatcatccatcagttggtagagaaagtcaaa 115  Q
    |||||| |||||| | |||||||| | | ||||||||||||||| | ||||||||||||||| |||   ||   | || || |||||||||||| |||||    
T  22820077 atttggttgtgttctatgtgggttctgtggaatgaaagaaacag-cagggtcttcaaaaatagggaacacactgttcaccaattggtagagaaaatcaaa 22820175  T
Q  116 -tacattcttttttggtggatgaaggctactgatatttccattcggcctaattttcatatgtggtattcgagcccttttgtttgtttgagcattgg 210  Q
     | || || |||| ||||||||||||||||| ||||||| |||||   ||||||||||||||||| ||| |||||||||||||||||| |||||||    
T  22820176 gtgcaatcctttt-ggtggatgaaggctactaatatttctattcgtaataattttcatatgtggtgttcaagcccttttgtttgtttgggcattgg 22820270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 265 - 337
Target Start/End: Complemental strand, 9599453 - 9599380
Alignment:
Q  265 tttgaggattcttgagcacaccttgtgcttgagtatccttttgtgtttctaata-aattccaattttgcttgtt 337  Q
    ||||||| ||||| ||||||||||||||||||| |||||| ||||||||||||| ||||||| |||||||||||    
T  9599453 tttgaggtttctttagcacaccttgtgcttgaggatccttctgtgtttctaatataattccatttttgcttgtt 9599380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 265 - 337
Target Start/End: Complemental strand, 9827024 - 9826951
Alignment:
Q  265 tttgaggattcttgagcacaccttgtgcttgagtatccttttgtgtttctaata-aattccaattttgcttgtt 337  Q
    ||||||| ||||| ||||||||||||||||||| |||||| ||||||||||||| ||||||| |||||||||||    
T  9827024 tttgaggtttctttagcacaccttgtgcttgaggatccttctgtgtttctaatataattccatttttgcttgtt 9826951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 48 - 219
Target Start/End: Complemental strand, 45201386 - 45201216
Alignment:
Q  48 tgaaagaaacagtcggggtcttcaaaaataaggagagcatcatccatcagttggtagagaaagtcaaat-acattcttttttggtggatgaaggctactg 146  Q
    ||||||||||||||||| |||||||||||| |||    | ||| ||||| |||  ||||||| |||||| ||||||||| | ||| |||||||||||||     
T  45201386 tgaaagaaacagtcggg-tcttcaaaaatatggaccataacattcatcaattgacagagaaaatcaaattacattctttat-ggtagatgaaggctacta 45201289  T
Q  147 atatttccattcggcctaattttcatatgtggtattcgagcccttttgtttgtttgagcattggttagcctgt 219  Q
    ||||||  ||| | | ||||||||||||||||   || | |||||||||||||||  ||||||| ||| ||||    
T  45201288 atatttttatttgtcataattttcatatgtggcgatcaaacccttttgtttgttttggcattggctagactgt 45201216  T

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Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 179
Target Start/End: Original strand, 4615802 - 4615950
Alignment:
Q  30 tgtgtgggttatcttgaatgaaagaaacagtcggggtcttcaaaaataaggagagcatcatccatcagttggtagagaaagtcaaata-cattctttttt 128  Q
    |||||||||||| | || |||||||||||| |  ||||||||||||||||||    | | | || || |||||||||||| ||||||  || |||||| |    
T  4615802 tgtgtgggttatgtggagtgaaagaaacag-caaggtcttcaaaaataaggaccataccgttcaccaattggtagagaaaatcaaatttcaatctttt-t 4615899  T
Q  129 ggtggatgaaggctactgatatttccattcggcctaattttcatatgtggt 179  Q
    ||||||||||||||||| ||||||| || ||   |||||||||||||||||    
T  4615900 ggtggatgaaggctactaatatttctatccgtaataattttcatatgtggt 4615950  T

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Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 215
Target Start/End: Complemental strand, 17053189 - 17052991
Alignment:
Q  16 atttggatgtgttgtgtgtgggttatcttgaatgaaagaaacagtcggggtcttcaaaaataaggagagcatcatccatcagttggtagagaaagtcaaa 115  Q
    |||||| |||| | |||| ||||||| | || |||||||||||| | |||| ||||||||||||||    | | | || || |||||||||||| |||||    
T  17053189 atttggttgtgctctgtgggggttatgtggagtgaaagaaacag-cagggtattcaaaaataaggaccataccgttcaccaattggtagagaaaatcaaa 17053091  T
Q  116 t-acattcttttttggtggatgaaggctactgatatttccattcggcctaattttcatatgtggtattcgagcccttttgtttgtttgagcattggttag 214  Q
    | ||| ||||| | ||||||||||| ||||| || |||| || ||   |||||||||||||||||  |  |||||||||||||||||| | ||||| |||    
T  17053090 ttacagtctttct-ggtggatgaagactactaatttttctatccgtaataattttcatatgtggtggttaagcccttttgtttgtttgggtattggctag 17052992  T

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Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 210
Target Start/End: Complemental strand, 19048236 - 19048181
Alignment:
Q  155 attcggcctaattttcatatgtggtattcgagcccttttgtttgtttgagcattgg 210  Q
    ||||| |||||||||||||||||||  || ||||||||||||||| || |||||||    
T  19048236 attcgacctaattttcatatgtggtggtcaagcccttttgtttgtatgggcattgg 19048181  T

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Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 279 - 337
Target Start/End: Original strand, 33589169 - 33589227
Alignment:
Q  279 agcacaccttgtgcttgagtatccttttgtgtttctaataaattccaattttgcttgtt 337  Q
    ||||||||||||||||||| |  || |||||||||||||| |||||| ||||| |||||    
T  33589169 agcacaccttgtgcttgagaaatctcttgtgtttctaatatattccatttttgtttgtt 33589227  T

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Target: chr1 (Bit Score: 82; Significance: 2e-38; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 16 - 200
Target Start/End: Original strand, 31874297 - 31874480
Alignment:
Q  16 atttggatgtgttgtgtgtgggttatcttgaatgaaagaaacagtcggggtcttcaaaaataaggagagcatcatccatcagttggtagagaaagtcaaa 115  Q
    |||||| ||| |||||||||||| || | |||||||||||| ||||||  |||||||||||| |||||||| |||||| || ||||||||||||||||||    
T  31874297 atttggttgtattgtgtgtgggtcatgtggaatgaaagaaatagtcgga-tcttcaaaaatatggagagcaccatccaccaattggtagagaaagtcaaa 31874395  T
Q  116 t-acattcttttttggtggatgaaggctactgatatttccattcggcctaattttcatatgtggtattcgagcccttttgtttgtt 200  Q
    | |||||| |||| ||||||||||| ||| | ||||||| ||| || ||||||||||||||||||  |||||||||||||||||||    
T  31874396 ttacattcctttt-ggtggatgaagactattaatatttctatttgggctaattttcatatgtggtggtcgagcccttttgtttgtt 31874480  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 99 - 210
Target Start/End: Complemental strand, 3073448 - 3073337
Alignment:
Q  99 tggtagagaaagtcaaat-acattcttttttggtggatgaaggctactgatatttccattcggcctaattttcatatgtggtattcgagcccttttgttt 197  Q
    ||||||||||| |||||| ||| ||||||| |||||||||||||| || ||||||| || ||   |||||||||||||||||| || |||||||||||||    
T  3073448 tggtagagaaaatcaaattacaatcttttt-ggtggatgaaggcttctaatatttctatccgtaataattttcatatgtggtagtcaagcccttttgttt 3073350  T
Q  198 gtttgagcattgg 210  Q
    ||||| |||||||    
T  3073349 gtttgggcattgg 3073337  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 92 - 215
Target Start/End: Complemental strand, 21404543 - 21404420
Alignment:
Q  92 catcagttggtagagaaagtcaaa-tacattcttttttggtggatgaaggctactgatatttccattcggcctaattttcatatgtggtattcgagccct 190  Q
    ||||| |||||||||||| ||||| |||| ||||||| ||||||||||| ||||| || |||| ||  |   |||||||||||||||||  |  ||||||    
T  21404543 catcaattggtagagaaaatcaaagtacagtcttttt-ggtggatgaagactactaatttttctatctgtaataattttcatatgtggtggttaagccct 21404445  T
Q  191 tttgtttgtttgagcattggttagc 215  Q
    |||||||||||| | ||||| ||||    
T  21404444 tttgtttgtttgggtattggctagc 21404420  T

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Target: scaffold1112 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold1112
Description:

Target: scaffold1112; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 210
Target Start/End: Original strand, 1781 - 1974
Alignment:
Q  16 atttggatgtgttgtgtgtgggttatcttgaatgaaagaaacagtcggggtcttcaaaaataaggagagcatcatccatcagttggtagagaaagtcaa- 114  Q
    |||||| | ||||||||||||||| | | |||||||| ||| |||| || |||| |||||||  ||||| ||  | ||||| |||||||||||||||||     
T  1781 atttggttatgttgtgtgtgggttgtgtggaatgaaataaatagtc-ggatcttaaaaaatacagagagtattgttcatcaattggtagagaaagtcaag 1879  T
Q  115 atacattcttttttggtggatgaaggctactgatatttccattcggcctaattttcatatgtggtattcgagcccttttgtttgtttgagcattgg 210  Q
    || | |||  ||||||||||||||| |   | |||| || ||||||||||||||||||||||| |  ||||||| ||||||||||||| |||||||    
T  1880 attcgttc-cttttggtggatgaagtcgtttaatatctctattcggcctaattttcatatgtgatggtcgagcctttttgtttgtttgggcattgg 1974  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 116
Target Start/End: Complemental strand, 31263618 - 31263528
Alignment:
Q  25 tgttgtgtgtgggttatcttgaatgaaagaaacagtcggggtcttcaaaaataaggagagcatcatccatcagttggtagagaaagtcaaat 116  Q
    |||||||||||| || | | |||||||||||||||| | | ||||||||||||  |||||   ||| ||||| |||||||||||||||||||    
T  31263618 tgttgtgtgtggattgtgtggaatgaaagaaacagttgag-tcttcaaaaatacagagagtgccattcatcaattggtagagaaagtcaaat 31263528  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 219
Target Start/End: Complemental strand, 31263486 - 31263425
Alignment:
Q  158 cggcctaattttcatatgtggtattcgagcccttttgtttgtttgagcattggttagcctgt 219  Q
    ||||| ||||||||||||||||  | ||||||||||||||||||| | ||||| || |||||    
T  31263486 cggccaaattttcatatgtggtggtggagcccttttgtttgtttgggtattggctaacctgt 31263425  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 215
Target Start/End: Complemental strand, 17757642 - 17757551
Alignment:
Q  124 tttttggtggatgaaggctactgatatttccattcggcctaattttcatatgtggtattcgagcccttttgtttgtttgagcattggttagc 215  Q
    ||||||||||||||||| |||| ||||||| || ||   |||||||||||||||||  |  | | ||||||||| |||||||||||| ||||    
T  17757642 tttttggtggatgaaggttactaatatttctatccgtaataattttcatatgtggtggttaaactcttttgtttatttgagcattggctagc 17757551  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 209
Target Start/End: Complemental strand, 32191169 - 32191049
Alignment:
Q  89 atccatcagttggtagagaaagtcaaa-tacattcttttttggtggatgaaggctactgatatttccattcggcctaattttcatatgtggtattcgagc 187  Q
    |||||||||||| |||| ||||| ||  ||||||| |||| ||||||||||| ||||| |||||   ||||| |  ||||||  ||||||||  ||||||    
T  32191169 atccatcagttgctagataaagtgaagctacattcctttt-ggtggatgaagactactaatattaatattcgtctaaatttttgtatgtggtggtcgagc 32191071  T
Q  188 ccttttgtttgtttgagcattg 209  Q
    || ||| |||||||||||||||    
T  32191070 ccgtttatttgtttgagcattg 32191049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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