View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2605_low_19 (Length: 486)
Name: NF2605_low_19
Description: NF2605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2605_low_19 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 13 - 467
Target Start/End: Original strand, 26373801 - 26374255
Alignment:
| Q |
13 |
cagaggataggagaaatcccaaaccatctgaaacagagttaaagagagcagatttccttttcaaatgtacttttgatgttgataggtgtgtaatcgatga |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26373801 |
cagaggataggagaaatcccaaaccatctgaaacagagttaaagagagcagatttccttttcaaatgtacttttgatgttgataggtgtgtaatcgatga |
26373900 |
T |
|
| Q |
113 |
taagtttcctgataagattgatggagctgaaggtaagttatccatctcttgtatatctttgtcttctatcttcattgattaaattggacacaccacatat |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26373901 |
taagtttcctgataagattgatggagctgaaggtaagttatccatctcttgtatatctttgtcttctatcttcattgattaaattggacacaccacatat |
26374000 |
T |
|
| Q |
213 |
agtaactatttgaactgttcatactgtacatttgcttgattttttaaaatatggaagtatgtcgttgctattaaatatcattcctgattacattagttca |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26374001 |
agtaactatttgaactgttcatactgtacatttgcttgattttttaaaatatggaagtatgtcgttgctattaaatatcattcctgattacattagttca |
26374100 |
T |
|
| Q |
313 |
ttgtcttggtgttctgcagtggagcggttctttaataagaagggggctaaaaagaccgacaataatctacatcttgagacaaataaaatgcctcagcaga |
412 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26374101 |
ttgtcttggtgttctgcagtggagctgttctttaataagaagggggctaaaaagaccggcaataatctacatcttgagacaaataaaatgcctcagcaga |
26374200 |
T |
|
| Q |
413 |
taaaaaagacaaagataaagatgaaaacttatgagaatattaaagatgaggttaa |
467 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26374201 |
taaaaaagacaaagataaagatgaaaacttatgagaatattaaagatgaggttaa |
26374255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 108; Significance: 5e-54; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 28 - 235
Target Start/End: Complemental strand, 40767755 - 40767550
Alignment:
| Q |
28 |
atcccaaaccatctgaaacagagttaaagagagcagatttccttttcaaatgtacttttgatgttgataggtgtgtaatcgatgataagtttcctgataa |
127 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||| |||||||||| | |||| |||||||||| ||||| ||||| |
|
|
| T |
40767755 |
atcccaaaccatctgaaatagagttaaagagagcagatttctttttcaaacgtactttcgatgttgatacgcttgtagtcgatgataaatttccggataa |
40767656 |
T |
|
| Q |
128 |
gattgatggagctgaaggtaagttatccatctcttgtatatctttgtcttctatcttcattgattaaattggacacaccacatatagtaactatttgaac |
227 |
Q |
| |
|
||||||||||| ||||||| |||||| ||| ||||||| ||||||||| |||| |||| ||||||| |||||||||||||||| ||||||||||| | | |
|
|
| T |
40767655 |
gattgatggagttgaaggtcagttattcat-gcttgtatttctttgtctgctattttca-tgattaatttggacacaccacatacagtaactattttacc |
40767558 |
T |
|
| Q |
228 |
tgttcata |
235 |
Q |
| |
|
|||||||| |
|
|
| T |
40767557 |
tgttcata |
40767550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 318 - 370
Target Start/End: Complemental strand, 40767475 - 40767423
Alignment:
| Q |
318 |
ttggtgttctgcagtggagcggttctttaataagaagggggctaaaaagaccg |
370 |
Q |
| |
|
||||||||| |||||||| ||||||| ||||| |||||||| ||||||||||| |
|
|
| T |
40767475 |
ttggtgttcagcagtggatcggttctctaatatgaagggggataaaaagaccg |
40767423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 427 - 459
Target Start/End: Complemental strand, 40767391 - 40767359
Alignment:
| Q |
427 |
ataaagatgaaaacttatgagaatattaaagat |
459 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |
|
|
| T |
40767391 |
ataaagatgagaacttatgagaatattaaagat |
40767359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University