View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2605_low_21 (Length: 477)
Name: NF2605_low_21
Description: NF2605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2605_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 31 - 466
Target Start/End: Complemental strand, 38013666 - 38013233
Alignment:
| Q |
31 |
ctcatagtaatgctaacactacttggtagtcaacttgagtagacaaaattttctgtggaagagacctagtttagtagtatgtaagaatgtgtctggatta |
130 |
Q |
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| T |
38013666 |
ctcatagtaatgctaacactacttggtagtcaacttgagtagacaaaagtttctgtggaagagacctagtttagtagtatgtaagaatgtgtctggatta |
38013567 |
T |
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| Q |
131 |
cgtttcttttcatcatcatatagaggtttaaagagctaaagatctctttctagactttccaaaaggtca-aaaacattggcagaaaaggcttaagagata |
229 |
Q |
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| T |
38013566 |
tgtttcttttgatcatcatatagaggtttaaagaggtaaagatctctttctagactttccaaaaggtcagaaaacattggcagaaaaggcttaagagata |
38013467 |
T |
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| Q |
230 |
taaaaagcatatataatggagcataaatcacatattttgaggttatcttttatgattattgttgtgtgaggattaaagtgatagcatatattgtcaggag |
329 |
Q |
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| T |
38013466 |
taaaaagcatatataatggagcataaatcacatattttgaggttatcttttatgattattgttgtgtgaggtttaaagtgatagcatatattgtcaggag |
38013367 |
T |
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| Q |
330 |
gtttaaaaatgtcataaatgataaacttttggattactattcctgttgaaacaaaatccaatgcttgannnnnnnnnncttcctgtcttcaaataaatgc |
429 |
Q |
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| T |
38013366 |
gtttaaaaatgtcataaatgataaacttttggattactattcctgttgaaacaaaatccaatgcttgatttttttt---ttcctgtcttcaaataaatgc |
38013270 |
T |
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| Q |
430 |
ttatttcatactctttcgcaaaaattgcttatttcat |
466 |
Q |
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| T |
38013269 |
ttatttcatactctttcgcaaaaattgcttatttcat |
38013233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 252 - 351
Target Start/End: Original strand, 27009589 - 27009682
Alignment:
| Q |
252 |
ataaatcacatattttgaggttatcttttatgattattgttgtgtgaggattaaagtgatagcatatattgtcaggaggtttaaaaatgtcataaatgat |
351 |
Q |
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| T |
27009589 |
ataaatcagatattttgtggttatcttt-atgatttttgttatgtgaggttgaaagtgata-----tattgacaggatgtatcaaaatgtcataaatgat |
27009682 |
T |
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