View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2605_low_23 (Length: 452)
Name: NF2605_low_23
Description: NF2605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2605_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 401; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 13 - 433
Target Start/End: Complemental strand, 2789420 - 2789000
Alignment:
| Q |
13 |
aatatcacatccatcagcgccattttgctttgctttctcacactcattcaagaatgtattgaatgcatcctcgacatatttaactgcgtccaaaacacac |
112 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2789420 |
aatatcacatccatcagctccattttgctttgctttctcacactcattcaagaatgtattgaatgcaacctcgacatatttaactgcgtccaaaacacac |
2789321 |
T |
|
| Q |
113 |
atgttctcgatcaacttgttgggatatatactctttctatgatccccattaagagtagctgccattagtaccaattcttcctgaaattcactcaacttgg |
212 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2789320 |
atgttctcgatcaacttgttgggatatatactctttctatgatccccattaagagtagctgccattagtaccaattcttcctgaaattcactcaacttgg |
2789221 |
T |
|
| Q |
213 |
cttcttctttagcagcagcctctcgcagcttaatcggttcgggcagtttttctgcacaatgaatacttaaatagtcaagaaacacgattgatggtcaaat |
312 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
2789220 |
cttcttctttagcagcggcctctcgcagcttaatcggttcgggcagtttttctgcacaatgaatacttaaatagtcaagaaacacgattgatggtcgaat |
2789121 |
T |
|
| Q |
313 |
ttgttattcatgtacatgtaatatcaataattgattattgatagatattataatgattgaaaacagaattgatcgacattattcaacactctaaagtaag |
412 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2789120 |
ttgttattcatgtacatgtaatatcaataattgattaatgatagatattataatgattgaaaacagaattgatcgacattattcaacactctaaagtaag |
2789021 |
T |
|
| Q |
413 |
ttgtttactttagaggagtct |
433 |
Q |
| |
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||||||||||||||||||||| |
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| T |
2789020 |
ttgtttactttagaggagtct |
2789000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 13 - 433
Target Start/End: Complemental strand, 2830674 - 2830254
Alignment:
| Q |
13 |
aatatcacatccatcagcgccattttgctttgctttctcacactcattcaagaatgtattgaatgcatcctcgacatatttaactgcgtccaaaacacac |
112 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
2830674 |
aatatcacatccatcagctccattttgcttggctttctcacactcattcaaaaatgtattgaatgcatcctcggcatatttaactgcgtccgaaacacac |
2830575 |
T |
|
| Q |
113 |
atgttctcgatcaacttgttgggatatatactctttctatgatccccattaagagtagctgccattagtaccaattcttcctgaaattcactcaacttgg |
212 |
Q |
| |
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||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2830574 |
atgttctcgatcaacttgtcaggatatatactctttttatgatccccattaagagtagctgccattagtaccaattcttcctgaaattcactcaacttgg |
2830475 |
T |
|
| Q |
213 |
cttcttctttagcagcagcctctcgcagcttaatcggttcgggcagtttttctgcacaatgaatacttaaatagtcaagaaacacgattgatggtcaaat |
312 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
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| T |
2830474 |
cttcttctttagcagcagcctctcgcagcttaatcggttcgggcagtttttctgcacaatgaacacttaaatagtcaagaaacacgattgatggtcgaat |
2830375 |
T |
|
| Q |
313 |
ttgttattcatgtacatgtaatatcaataattgattattgatagatattataatgattgaaaacagaattgatcgacattattcaacactctaaagtaag |
412 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| ||||||| |||||||| | ||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
2830374 |
ttgttattcacgtacatgtaatatcaataattgattaatgatagacattataatcactgaaaactgaattgatcgacattattcaacactctaaagtaag |
2830275 |
T |
|
| Q |
413 |
ttgtttactttagaggagtct |
433 |
Q |
| |
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||||| ||||||||||||||| |
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|
| T |
2830274 |
ttgttaactttagaggagtct |
2830254 |
T |
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