View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2605_low_25 (Length: 400)
Name: NF2605_low_25
Description: NF2605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2605_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 18 - 388
Target Start/End: Original strand, 39885938 - 39886308
Alignment:
| Q |
18 |
ttcttcctaaacataactgattgttagcagagttaattgaaggggaggttattgtctatggaaaaactagaggggaggtgtgtgacatttgattaaagct |
117 |
Q |
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| T |
39885938 |
ttcttcctaaacataactgattgttagcagagttaattgaaggggaggttattgtctatggaaaaactagaggggaggtgtgtgacatttgattaaagct |
39886037 |
T |
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| Q |
118 |
taggggaggtcaatataacttcccctaattataatatctactaccttgatacataagattcaaaccatcaaaatcgtctacaactagcatatcctaaagt |
217 |
Q |
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| T |
39886038 |
taggggaggtcaatataatttcccctaattataatatctactaccttgatacataagattcaaaccatcaatatcgtctacaactagcatatcctaaagt |
39886137 |
T |
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| Q |
218 |
tgaatatgatatacaccgcactttcaatcattcactgggatatccaaaataacaattcaaatcaagtcactatatgtggtccttccaccagtggaaaacc |
317 |
Q |
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| T |
39886138 |
tgaatatgatatacaccgcactttcaatcattcactgggatatccaaaataacaattcaaatcaagtcactatatgtggtccttccaccagtggaaaacc |
39886237 |
T |
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| Q |
318 |
ggtccccttcctcagagtaatgccaaacattgtaataacaatatcttaagtctagacacactccaacatat |
388 |
Q |
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| T |
39886238 |
ggtccccttcctcagagtaatgccaaacattgtaataacaatatcttaagtctagacaaactccaacatat |
39886308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 80 - 145
Target Start/End: Complemental strand, 6473480 - 6473415
Alignment:
| Q |
80 |
aaaactagaggggaggtgtgtgacatttgattaaagcttaggggaggtcaatataacttcccctaa |
145 |
Q |
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| T |
6473480 |
aaaactagaggggaggtttgtgacatttgattaaacctcaggggaggtcaatgcaatttcccctaa |
6473415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 127
Target Start/End: Original strand, 31547887 - 31547933
Alignment:
| Q |
81 |
aaactagaggggaggtgtgtgacatttgattaaagcttaggggaggt |
127 |
Q |
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| T |
31547887 |
aaactagaggcgaggtgtgtgacatttaactaaaacttaggggaggt |
31547933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 127
Target Start/End: Original strand, 51292454 - 51292500
Alignment:
| Q |
81 |
aaactagaggggaggtgtgtgacatttgattaaagcttaggggaggt |
127 |
Q |
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| T |
51292454 |
aaactagaggggaggtgtgtgacatttaactaaaccttaggggaggt |
51292500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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