View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2605_low_27 (Length: 380)
Name: NF2605_low_27
Description: NF2605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2605_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 79 - 364
Target Start/End: Original strand, 47499340 - 47499626
Alignment:
| Q |
79 |
atgcatcattcacgtaatttatactctcagtctctcacattacgttttcaggagaataggagagaaaa-aagaaaataccgtaagaagttggtcgtatat |
177 |
Q |
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| T |
47499340 |
atgcatcattcacgtaatttatactctcagtctctcacattacgttttcaggagaataggagagaaaaaaagaaaataccgtaggaagttggtcgtatat |
47499439 |
T |
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| Q |
178 |
attcatgaatcggaaatgaatcaatgcaacctatttcaaactcttatatccagcgactaaatctaaggtacaaaatctttgtgagtctagtttagttgat |
277 |
Q |
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| T |
47499440 |
attcatgaatcggaaatgaatcaatgcaacctatttcaaactcttatatctagcgactaaagctaaggtacaaaatcttcgtgagtctagtttagttgat |
47499539 |
T |
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| Q |
278 |
ataaacattgtataatagttataaggattgatgttcgaattcaaacattcatttaatcatcttaagatgcaaatttttagtcattag |
364 |
Q |
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| T |
47499540 |
atgaacattgtataatagttataaggattgatgttcgaattcaaacattcatttaatcatcttaagatgcaaatctttagtcattag |
47499626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 47499248 - 47499320
Alignment:
| Q |
17 |
aaaccctgtataaaattttggcatctatgccacgacctctgtactgttaggcgttagcatcaatgcatcattc |
89 |
Q |
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| T |
47499248 |
aaaccctatataaaattttggcatatatgccacgacctctgtactgttaggcgttagcatcaatgcatcattc |
47499320 |
T |
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