View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2605_low_28 (Length: 367)
Name: NF2605_low_28
Description: NF2605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2605_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 350
Target Start/End: Original strand, 30346025 - 30346374
Alignment:
| Q |
1 |
gagaacaagaaagaaccatttgatgttattcattcagaaagtgttgcacttcctcattatgtagctaggaatctttcaaatcttgtagtgtcttggcatg |
100 |
Q |
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| T |
30346025 |
gagaacaagaaagaaccatttgatgttattcattcagaaagtgttgcacttcctcattatgtagctaggaatctttcaaatcttgtagtgtcttggcatg |
30346124 |
T |
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| Q |
101 |
gaatagcacttgagagtttgcaatcaagtatttttcaggatttagctagaagacctgatgaacctatttcacctcttttcaacaatagcttgcagggaat |
200 |
Q |
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| T |
30346125 |
gaatagcacttgagagtttgcaatcaagtatttttcaggatttagctagaagacctgatgaacctatttcacctcttttcaacaatagcttgcagggaat |
30346224 |
T |
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| Q |
201 |
tgttcctaaggttctgaatgagataagattctttaagagttatgctcatcatgttgctattagtgatagctgtggtgagatgctaagagatttctgtcaa |
300 |
Q |
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| T |
30346225 |
tgttcctaaggttctgaatgagataagattctttaagagttatgctcatcatgttgctattagtgatagctgtggtgagatgctaagagatttctatcaa |
30346324 |
T |
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| Q |
301 |
attcctacaagaagagtgcatgtgattgttaatggggttgatgaggatga |
350 |
Q |
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| T |
30346325 |
attcctacaagaagagtgcatgtgattgttaatggggttgatgaggatga |
30346374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 200 - 354
Target Start/End: Complemental strand, 10841418 - 10841264
Alignment:
| Q |
200 |
ttgttcctaaggttctgaatgagataagattctttaagagttatgctcatcatgttgctattagtgatagctgtggtgagatgctaagagatttctgtca |
299 |
Q |
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| T |
10841418 |
ttgttcctaaggttctaaatgagataagattcttcaacaaatattctcatcatgttgctattagtgatagttgtggtgagatgttaagagatgtttacca |
10841319 |
T |
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| Q |
300 |
aattcctacaagaagagtgcatgtgattgttaatggggttgatgaggatgatttt |
354 |
Q |
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| T |
10841318 |
aattccaagtagaagagttcatgtgattctcaatggtgttgacgaggaagatttt |
10841264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 137
Target Start/End: Complemental strand, 10841604 - 10841481
Alignment:
| Q |
14 |
aaccatttgatgttattcattcagaaagtgttgcacttcctcattatgtagctaggaatctttcaaatcttgtagtgtcttggcatggaatagcacttga |
113 |
Q |
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| T |
10841604 |
aaccttttgatgttgttcattcagaaagtgtagcacttcctcattggcttgcaaaagatcttccaaatcttgttgtatcctggcatggcatagcattgga |
10841505 |
T |
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| Q |
114 |
gagtttgcaatcaagtatttttca |
137 |
Q |
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| T |
10841504 |
aagcttgcaatcgagcatttttca |
10841481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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