View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2605_low_29 (Length: 361)
Name: NF2605_low_29
Description: NF2605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2605_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 17 - 355
Target Start/End: Original strand, 31172115 - 31172453
Alignment:
| Q |
17 |
acttggtccccacaggatattcactcatgattagcaatgattaggtcaggtacgaagggtaaacgcgtgtcacaccatgtgtggaactggaaggagcaag |
116 |
Q |
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| T |
31172115 |
acttggtccccacaggatattcactcgtgattagcaatgattaggtcaggtacgaagggtaaacgcgtgtcacaccatgtgtggaactggaaggagcaag |
31172214 |
T |
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| Q |
117 |
cccataattatggacggtagctcttacttggttaatccccatctccctatccagtatagtagttatgggggatggtcctatatgcttactcagtcgtcct |
216 |
Q |
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| T |
31172215 |
cccataattatggacggtggctcttacttggttaatccccatctccctatccagtatagtagttatgggggatggtcctatatgcttactcagtcgtcct |
31172314 |
T |
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| Q |
217 |
aaatcggacgtttttggagacaacttacccctccctatggaattgagcttggcccaatggtcttaatatttggtactgaacaccgttaacatataaggca |
316 |
Q |
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| T |
31172315 |
aaatcggacgtttttggagacaacttacccctccctatggaattgagcttggcccaatggtcttaatatttggtactgaacaccgttaacatacaaggca |
31172414 |
T |
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| Q |
317 |
atgtcgtaagagtgatttgaaaattgaaagtacctatgc |
355 |
Q |
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| T |
31172415 |
acgtcgtaagagtgatttgaaaattgaaagtacctatgc |
31172453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 29767834 - 29767780
Alignment:
| Q |
21 |
ggtccccacaggatattcactcatgattagcaatgattaggtcaggtacgaaggg |
75 |
Q |
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| T |
29767834 |
ggtccccactggatattccctcatgattagaaatgattaggtgcggtacgaaggg |
29767780 |
T |
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