View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2605_low_34 (Length: 323)
Name: NF2605_low_34
Description: NF2605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2605_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 309; Significance: 1e-174; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 5995001 - 5994689
Alignment:
| Q |
1 |
gaagaaaatgaaagaaagtggaaaaggctatttgatttggggatgggcaccacagcttttgatacttgagaatcatgcaattggagggttagtgagtcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5995001 |
gaagaaaatgaaagaaagtggaaaaggctatttgatttggggatgggcaccacagcttttgatacttgagaatcatgcaattggagggttagtgagtcat |
5994902 |
T |
|
| Q |
101 |
tgtggttggaacactgttgttgaaagtgtgaatgttgggttaccaacagtgacatggcctttatttgctgaacattttttcaatgagaaacttgtagttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5994901 |
tgtggttggaacactgttgttgaaagtgtgaatgttgggttaccaacagtgacatggcctttatttgctgaacattttttcaatgagaaacttgtagttg |
5994802 |
T |
|
| Q |
201 |
atgtgttgaaaattggtgttcctgtgggagctaaagaatggaggaactggaatgagtttgggagtgaggttgtgaaaagggaagatattgggaatgctat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5994801 |
atgtgttgaaaattggtgttcctgtgggagctaaagaatggaggaattggaatgagtttgggagtgaggttgtgaaaagggaagatattgggaatgctat |
5994702 |
T |
|
| Q |
301 |
taggttgatgatg |
313 |
Q |
| |
|
||||||||||||| |
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|
| T |
5994701 |
taggttgatgatg |
5994689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 29 - 301
Target Start/End: Complemental strand, 17572584 - 17572312
Alignment:
| Q |
29 |
tatttgatttggggatgggcaccacagcttttgatacttgagaatcatgcaattggagggttagtgagtcattgtggttggaacactgttgttgaaagtg |
128 |
Q |
| |
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|||||||| ||||| ||||| || || | || ||||||||||| | || |||||||| | |||||||||||||||||||| || | |||||||| |
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| T |
17572584 |
tatttgatatggggttgggctccccaattgttaatacttgagaacaaagctattggaggaatggtgagtcattgtggttggaatacaatagttgaaagca |
17572485 |
T |
|
| Q |
129 |
tgaatgttgggttaccaacagtgacatggcctttatttgctgaacattttttcaatgagaaacttgtagttgatgtgttgaaaattggtgttcctgtggg |
228 |
Q |
| |
|
|||||||||| || || | ||||| |||||||| ||||||||||||||||| |||||||| | || ||||||||||||| |||||| || |||| || |
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| T |
17572484 |
tgaatgttggtttgcctatggtgacttggcctttgtttgctgaacatttttttaatgagaagttggttgttgatgtgttgagaattggggtatctgttgg |
17572385 |
T |
|
| Q |
229 |
agctaaagaatggaggaactggaatgagtttgggagtgaggttgtgaaaagggaagatattgggaatgctatt |
301 |
Q |
| |
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|| ||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||| || |||||| |
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|
| T |
17572384 |
ggccaaagaatggagaaattggaatgagtttgggagtgaggttgtgaaaagggaagaaattggaaaggctatt |
17572312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 29 - 290
Target Start/End: Original strand, 17620134 - 17620395
Alignment:
| Q |
29 |
tatttgatttggggatgggcaccacagcttttgatacttgagaatcatgcaattggagggttagtgagtcattgtggttggaacactgttgttgaaagtg |
128 |
Q |
| |
|
|||||||| ||||| ||||| ||||| | ||||||||||| ||| | || |||||||| | |||| |||||||||||||| ||| | | ||||| |
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|
| T |
17620134 |
tatttgatatggggttgggccccacaaatgttgatacttgaaaataaagctattggaggaattgtgactcattgtggttggagcacaataatggaaagca |
17620233 |
T |
|
| Q |
129 |
tgaatgttgggttaccaacagtgacatggcctttatttgctgaacattttttcaatgagaaacttgtagttgatgtgttgaaaattggtgttcctgtggg |
228 |
Q |
| |
|
| || ||||||||||| | |||| |||||||| |||||||| || ||||| |||||||| || | |||||||||||| |||||| ||| |||| || |
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|
| T |
17620234 |
ttaaagttgggttacctatggtgagttggcctttgtttgctgatcaattttttaatgagaagattattattgatgtgttgagaattggggtttctgttgg |
17620333 |
T |
|
| Q |
229 |
agctaaagaatggaggaactggaatgagtttgggagtgaggttgtgaaaagggaagatattg |
290 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
17620334 |
ggctaaagaatggagaaattggaatgagtttgggagtgaggttgtgaaaagggaagaaattg |
17620395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 29 - 301
Target Start/End: Complemental strand, 14710181 - 14709909
Alignment:
| Q |
29 |
tatttgatttggggatgggcaccacagcttttgatacttgagaatcatgcaattggagggttagtgagtcattgtggttggaacactgttgttgaaagtg |
128 |
Q |
| |
|
|||||||| ||||| ||||||||||| | ||||||||||| ||| | || |||||||| | |||| |||||||||||||| ||| | | ||||| |
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|
| T |
14710181 |
tatttgatatggggttgggcaccacaaatgttgatacttgaaaataaagctattggaggaattgtgactcattgtggttggagcacaataatggaaagca |
14710082 |
T |
|
| Q |
129 |
tgaatgttgggttaccaacagtgacatggcctttatttgctgaacattttttcaatgagaaacttgtagttgatgtgttgaaaattggtgttcctgtggg |
228 |
Q |
| |
|
| || ||||||||| | | |||| |||||||| |||||||| || ||||| |||||||| || | |||||||||||| |||||| || |||| || |
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|
| T |
14710081 |
ttaaagttgggttatctatggtgagttggcctttgtttgctgatcaattttttaatgagaagattattattgatgtgttgagaattggggtgtctgttgg |
14709982 |
T |
|
| Q |
229 |
agctaaagaatggaggaactggaatgagtttgggagtgaggttgtgaaaagggaagatattgggaatgctatt |
301 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||| || |||||| |
|
|
| T |
14709981 |
ggctaaagaatggagaaattggaatgagtttgggagtgaggttgtgaaaagggaagaaattggaaaggctatt |
14709909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 16908754 - 16908467
Alignment:
| Q |
1 |
gaagaaaatgaaagaaagtggaaaaggctatttgatttggggatgggcaccacagcttttgatacttgagaatcatgcaattggagggttagtgagtcat |
100 |
Q |
| |
|
||||| |||||||||||| |||||||||||||| ||||| ||||||||||||||| ||||||| ||| || |||| |||||| | |||| |||| |
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|
| T |
16908754 |
gaagagaatgaaagaaagaaacaaaggctatttgatatggggttgggcaccacagcttctgatactagagcatggtgcagttggagctgttgtgactcat |
16908655 |
T |
|
| Q |
101 |
tgtggttggaacactgttgttgaaagtgtgaatgttgggttaccaacagtgacatggcctttatttgctgaacattttttcaatgagaaacttgtagttg |
200 |
Q |
| |
|
||||| ||||||||| || | |||||||| |||| || |||||| | || ||||| || ||||||||||| ||||||||||||| | | | |||| |
|
|
| T |
16908654 |
tgtgggtggaacactattatggaaagtgtaaatgcaggtttaccattggctacttggccattgtttgctgaacagtttttcaatgagagattgttggttg |
16908555 |
T |
|
| Q |
201 |
atgtgttgaaaattggtgttcctgtgggagctaaagaatggaggaactggaatgagtttgggagtgaggttgtgaaaagggaagatat |
288 |
Q |
| |
|
|||||||||| |||||||| | || ||||| ||||||||||| || ||||||||||||||| ||| || ||||| ||||| ||||| |
|
|
| T |
16908554 |
atgtgttgaagattggtgtggcagttggagcaaaagaatggagaaattggaatgagtttggggatgatgtggtgaagagggaggatat |
16908467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 111
Target Start/End: Complemental strand, 10201935 - 10201902
Alignment:
| Q |
78 |
caattggagggttagtgagtcattgtggttggaa |
111 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |
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|
| T |
10201935 |
caattggagggtttgtgagtcattgtggttggaa |
10201902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 111
Target Start/End: Complemental strand, 10209008 - 10208975
Alignment:
| Q |
78 |
caattggagggttagtgagtcattgtggttggaa |
111 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |
|
|
| T |
10209008 |
caattggagggtttgtgagtcattgtggttggaa |
10208975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 29 - 216
Target Start/End: Original strand, 12613646 - 12613833
Alignment:
| Q |
29 |
tatttgatttggggatgggcaccacagcttttgatacttgagaatcatgcaattggagggttagtgagtcattgtggttggaacactgttgttgaaagtg |
128 |
Q |
| |
|
|||||||| ||||| ||||||||||| | |||||||||||||| | || |||||||| | |||| |||||||||||||||||| || ||||||||| |
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|
| T |
12613646 |
tatttgatatggggttgggcaccacaattgttgatacttgagaacaaagctattggaggaattgtgactcattgtggttggaacacagtagttgaaagtt |
12613745 |
T |
|
| Q |
129 |
tgaatgttgggttaccaacagtgacatggcctttatttgctgaacattttttcaatgagaaacttgtagttgatgtgttgaaaattgg |
216 |
Q |
| |
|
||||||||||||| || | ||||| |||||||||||||||||||| ||||| |||||||| | || ||||| ||||| |||||||| |
|
|
| T |
12613746 |
tgaatgttgggttgcctatggtgacttggcctttatttgctgaacaattttttcatgagaaattggtggttgaagtgttaaaaattgg |
12613833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 262
Target Start/End: Original strand, 14869927 - 14870166
Alignment:
| Q |
23 |
aaaggctatttgatttggggatgggcaccacagcttttgatacttgagaatcatgcaattggagggttagtgagtcattgtggttggaacactgttgttg |
122 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||| || ||||||| ||| || |||| |||||| | |||| ||| ||||| ||||||||| || | | |
|
|
| T |
14869927 |
aaaggctatttgatatggggttgggcaccacaactgctgatactagagcatgctgcagttggagcagtggtgactcactgtggctggaacactattatgg |
14870026 |
T |
|
| Q |
123 |
aaagtgtgaatgttgggttaccaacagtgacatggcctttatttgctgaacattttttcaatgagaaacttgtagttgatgtgttgaaaattggtgttcc |
222 |
Q |
| |
|
||||||| |||| || || || | || ||||| || ||||||||||| ||||||||||||| | | | |||||||||||||| |||||||| | |
|
|
| T |
14870027 |
aaagtgtaaatgcaggtttgtcattggcaacttggccattgtttgctgaacagtttttcaatgagagattgttggttgatgtgttgaagattggtgtggc |
14870126 |
T |
|
| Q |
223 |
tgtgggagctaaagaatggaggaactggaatgagtttggg |
262 |
Q |
| |
|
|| ||||| || |||||||| |||||||||||||||||| |
|
|
| T |
14870127 |
agttggagcaaaggaatggagaaactggaatgagtttggg |
14870166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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