View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2605_low_36 (Length: 321)
Name: NF2605_low_36
Description: NF2605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2605_low_36 |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 18 - 315
Target Start/End: Original strand, 10493966 - 10494271
Alignment:
| Q |
18 |
tttatgtgctttcccaaactgagagttttccaacaaagtactc--------tgggtaaggttatggggttgttccatgcactacaatggtcggcataatg |
109 |
Q |
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| T |
10493966 |
tttatgtgctttcccaaactgagagttttccaacaaagtactcagatgatgtgggtgaagttatggggttgttccatgcactacaacggtcggcataatg |
10494065 |
T |
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| Q |
110 |
cggttcgatagtgtggattttgtgactgactcaaaggtaacaaccgaagctttcaactcctctcggattgatgttacggagtgtggtcacatcattaaag |
209 |
Q |
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| T |
10494066 |
cagtttgatagtgtggattttgtgactgactcaaaggtaacaaccgaagctttcaactcctctaagattgatgttacggagtgtggtcacatcattaaag |
10494165 |
T |
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| Q |
210 |
cattaacctattttccacactttttacaaactctaggatgaagtttagtcaacgacaaacaaatgtgacaactcacgttcttgtagcgaaaccatagtat |
309 |
Q |
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| T |
10494166 |
cattaacctattttccacactttttacaatctctaggatgaagtttagtcagcgacaagcaaatgtgacaactcacgttcttgtagcaaaaccatgttat |
10494265 |
T |
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| Q |
310 |
tatcta |
315 |
Q |
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|||||| |
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| T |
10494266 |
tatcta |
10494271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 78 - 153
Target Start/End: Original strand, 10493626 - 10493702
Alignment:
| Q |
78 |
ttgttccatgcactacaatggtcggcat-aatgcggttcgatagtgtggattttgtgactgactcaaaggtaacaac |
153 |
Q |
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| T |
10493626 |
ttgttctatgcgttacaatggttggcattaatgcagttcgatagtgtggattttatgactgactcaaaggtaacaac |
10493702 |
T |
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