View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2605_low_38 (Length: 320)

Name: NF2605_low_38
Description: NF2605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2605_low_38
NF2605_low_38
[»] chr1 (6 HSPs)
chr1 (168-242)||(44682952-44683026)
chr1 (129-242)||(44659807-44659920)
chr1 (49-87)||(48504158-48504196)
chr1 (49-87)||(12156504-12156542)
chr1 (48-96)||(38669798-38669846)
chr1 (49-79)||(34972746-34972776)
[»] chr4 (9 HSPs)
chr4 (129-242)||(29341863-29341976)
chr4 (129-230)||(29357890-29357991)
chr4 (49-99)||(18175029-18175079)
chr4 (49-99)||(18172461-18172511)
chr4 (49-87)||(31982575-31982613)
chr4 (53-90)||(36155551-36155588)
chr4 (49-79)||(39806046-39806076)
chr4 (60-96)||(19752739-19752775)
chr4 (60-96)||(19787031-19787067)
[»] chr7 (5 HSPs)
chr7 (22-99)||(27873803-27873880)
chr7 (49-96)||(26246957-26247004)
chr7 (51-96)||(21493796-21493841)
chr7 (49-78)||(37707358-37707387)
chr7 (60-96)||(35819309-35819345)
[»] scaffold0002 (2 HSPs)
scaffold0002 (49-99)||(294899-294949)
scaffold0002 (60-99)||(295898-295937)
[»] chr6 (1 HSPs)
chr6 (49-102)||(32093258-32093311)
[»] chr8 (4 HSPs)
chr8 (49-96)||(17506006-17506053)
chr8 (52-96)||(36339984-36340028)
chr8 (49-86)||(23662400-23662437)
chr8 (49-86)||(23666652-23666689)
[»] chr5 (4 HSPs)
chr5 (9-87)||(19285137-19285216)
chr5 (60-93)||(27767507-27767540)
chr5 (60-96)||(17131315-17131351)
chr5 (60-96)||(32243610-32243646)
[»] chr3 (2 HSPs)
chr3 (49-87)||(35085298-35085336)
chr3 (49-82)||(35085270-35085303)
[»] chr2 (2 HSPs)
chr2 (49-87)||(27408128-27408166)
chr2 (56-98)||(22831316-22831358)
[»] scaffold0015 (1 HSPs)
scaffold0015 (60-96)||(63222-63258)


Alignment Details
Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 168 - 242
Target Start/End: Complemental strand, 44683026 - 44682952
Alignment:
Q  168 acacatttgttcatgaatttattgaaaaacgatccatttgatctagagatgaacaatttcagcctctatgcattg 242  Q
    |||| ||||||||||||||||||||||||||||||||||| || | ||||||||||||| |||||||||||||||    
T  44683026 acacctttgttcatgaatttattgaaaaacgatccatttggtcaaaagatgaacaatttaagcctctatgcattg 44682952  T

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Target: chr1; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 129 - 242
Target Start/End: Complemental strand, 44659920 - 44659807
Alignment:
Q  129 atgtggtagaattgaagtacgttactattgaaatgcttaacacatttgttcatgaatttattgaaaaacgatccatttgatctagagatgaacaatttca 228  Q
    |||||||||  |||||| |||||||| ||||||||||  || ||||||| | |||||||| |||||||| ||||||||| | || |||||||||||||||    
T  44659920 atgtggtagtgttgaagcacgttactgttgaaatgctcgactcatttgtccgtgaatttactgaaaaacaatccatttggtataaagatgaacaatttca 44659821  T
Q  229 gcctctatgcattg 242  Q
    ||||| ||||||||    
T  44659820 gcctccatgcattg 44659807  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 49 - 87
Target Start/End: Complemental strand, 48504196 - 48504158
Alignment:
Q  49 taattactgagggaataatccctcagtaatgctttgtca 87  Q
    |||||||||||||||||||||||||||||||||||||||    
T  48504196 taattactgagggaataatccctcagtaatgctttgtca 48504158  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 87
Target Start/End: Complemental strand, 12156542 - 12156504
Alignment:
Q  49 taattactgagggaataatccctcagtaatgctttgtca 87  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  12156542 taattattgagggaataatccctcagtaatgctttgtca 12156504  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 96
Target Start/End: Complemental strand, 38669846 - 38669798
Alignment:
Q  48 ataattactgagggaataatccctcagtaatgctttgtcagtactacct 96  Q
    ||||||||||| ||||||||| |||||||||||||||| |||| |||||    
T  38669846 ataattactgaaggaataatcactcagtaatgctttgttagtattacct 38669798  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 79
Target Start/End: Original strand, 34972746 - 34972776
Alignment:
Q  49 taattactgagggaataatccctcagtaatg 79  Q
    |||||||||||||||||||||||||||||||    
T  34972746 taattactgagggaataatccctcagtaatg 34972776  T

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Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 129 - 242
Target Start/End: Original strand, 29341863 - 29341976
Alignment:
Q  129 atgtggtagaattgaagtacgttactattgaaatgcttaacacatttgttcatgaatttattgaaaaacgatccatttgatctagagatgaacaatttca 228  Q
    |||||||||  |||||| || ||||||||||||||||| |||| |||||||||||||||||  |||||||||| ||||| |||| ||||| ||| |||||    
T  29341863 atgtggtagtgttgaagcacattactattgaaatgcttgacacctttgttcatgaatttatccaaaaacgatcgatttggtctaaagatggacactttca 29341962  T
Q  229 gcctctatgcattg 242  Q
     |||| ||| ||||    
T  29341963 acctccatgtattg 29341976  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 129 - 230
Target Start/End: Original strand, 29357890 - 29357991
Alignment:
Q  129 atgtggtagaattgaagtacgttactattgaaatgcttaacacatttgttcatgaatttattgaaaaacgatccatttgatctagagatgaacaatttca 228  Q
    |||||||||  |||||| || ||||||||||||||||| |||| ||||||  |||||||||  |||||||||| ||||| |||| ||||| |||||||||    
T  29357890 atgtggtagtgttgaagcacattactattgaaatgcttgacacctttgtttgtgaatttatccaaaaacgatcgatttggtctaaagatggacaatttca 29357989  T
Q  229 gc 230  Q
    ||    
T  29357990 gc 29357991  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 49 - 99
Target Start/End: Complemental strand, 18175079 - 18175029
Alignment:
Q  49 taattactgagggaataatccctcagtaatgctttgtcagtactacctttc 99  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  18175079 taattactgagggaataatccctcagtactgctttgtcagaactacctttc 18175029  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 99
Target Start/End: Complemental strand, 18172511 - 18172461
Alignment:
Q  49 taattactgagggaataatccctcagtaatgctttgtcagtactacctttc 99  Q
    |||||||||  |||| |||||||||||||||||||||||| ||||||||||    
T  18172511 taattactggcggaacaatccctcagtaatgctttgtcagaactacctttc 18172461  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 87
Target Start/End: Original strand, 31982575 - 31982613
Alignment:
Q  49 taattactgagggaataatccctcagtaatgctttgtca 87  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  31982575 taattactgagggaataatccctcagtaatactttgtca 31982613  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 53 - 90
Target Start/End: Original strand, 36155551 - 36155588
Alignment:
Q  53 tactgagggaataatccctcagtaatgctttgtcagta 90  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  36155551 tactgagggaataatccctcagtaatgctatgtcagta 36155588  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 79
Target Start/End: Complemental strand, 39806076 - 39806046
Alignment:
Q  49 taattactgagggaataatccctcagtaatg 79  Q
    |||||||||||||||||||||||||||||||    
T  39806076 taattactgagggaataatccctcagtaatg 39806046  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 96
Target Start/End: Complemental strand, 19752775 - 19752739
Alignment:
Q  60 ggaataatccctcagtaatgctttgtcagtactacct 96  Q
    ||||||||||||||||||||||||||||  |||||||    
T  19752775 ggaataatccctcagtaatgctttgtcaaaactacct 19752739  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 19787031 - 19787067
Alignment:
Q  60 ggaataatccctcagtaatgctttgtcagtactacct 96  Q
    ||||||||||||||||||||||||||||  |||||||    
T  19787031 ggaataatccctcagtaatgctttgtcaaaactacct 19787067  T

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Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 22 - 99
Target Start/End: Original strand, 27873803 - 27873880
Alignment:
Q  22 gtaattactggcggaatagtgcatccataattactgagggaataatccctcagtaatgctttgtcagtactacctttc 99  Q
    |||||||||||||||| | | | ||  ||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  27873803 gtaattactggcggaacaatccctcagtaattactgagggaataatccatcagtaatgctttgtcagaactacctttc 27873880  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 49 - 96
Target Start/End: Complemental strand, 26247004 - 26246957
Alignment:
Q  49 taattactgagggaataatccctcagtaatgctttgtcagtactacct 96  Q
    |||||||||| |||||||||| |||||||||||||||||  |||||||    
T  26247004 taattactgaaggaataatccatcagtaatgctttgtcaaaactacct 26246957  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 96
Target Start/End: Complemental strand, 21493841 - 21493796
Alignment:
Q  51 attactgagggaataatccctcagtaatgctttgtcagtactacct 96  Q
    |||||||  ||||||||||||||||||||||||||||  |||||||    
T  21493841 attactggcggaataatccctcagtaatgctttgtcaaaactacct 21493796  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 78
Target Start/End: Original strand, 37707358 - 37707387
Alignment:
Q  49 taattactgagggaataatccctcagtaat 78  Q
    ||||||||||||||||||||||||||||||    
T  37707358 taattactgagggaataatccctcagtaat 37707387  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 96
Target Start/End: Complemental strand, 35819345 - 35819309
Alignment:
Q  60 ggaataatccctcagtaatgctttgtcagtactacct 96  Q
    ||||||||||||||||||||||||||||  |||||||    
T  35819345 ggaataatccctcagtaatgctttgtcaaaactacct 35819309  T

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Target: scaffold0002 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 49 - 99
Target Start/End: Original strand, 294899 - 294949
Alignment:
Q  49 taattactgagggaataatccctcagtaatgctttgtcagtactacctttc 99  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  294899 taattacggagggaataatccctcagtaatgctttgtcagaactacctttc 294949  T

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Target: scaffold0002; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 60 - 99
Target Start/End: Original strand, 295898 - 295937
Alignment:
Q  60 ggaataatccctcagtaatgctttgtcagtactacctttc 99  Q
    |||| |||||||||||||||||||||||| ||||||||||    
T  295898 ggaacaatccctcagtaatgctttgtcagaactacctttc 295937  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 102
Target Start/End: Original strand, 32093258 - 32093311
Alignment:
Q  49 taattactgagggaataatccctcagtaatgctttgtcagtactacctttccgt 102  Q
    |||||||||| ||| ||||||||||||||||||||||||||| ||||| |||||    
T  32093258 taattactgaaggagtaatccctcagtaatgctttgtcagtattacctctccgt 32093311  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 96
Target Start/End: Original strand, 17506006 - 17506053
Alignment:
Q  49 taattactgagggaataatccctcagtaatgctttgtcagtactacct 96  Q
    |||||||||  ||||||||||||||||||||||||||||| |||||||    
T  17506006 taattactggcggaataatccctcagtaatgctttgtcagaactacct 17506053  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 96
Target Start/End: Complemental strand, 36340028 - 36339984
Alignment:
Q  52 ttactgagggaataatccctcagtaatgctttgtcagtactacct 96  Q
    ||||||| ||||||||||||||||||||||||||||  |||||||    
T  36340028 ttactgacggaataatccctcagtaatgctttgtcaaaactacct 36339984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 86
Target Start/End: Complemental strand, 23662437 - 23662400
Alignment:
Q  49 taattactgagggaataatccctcagtaatgctttgtc 86  Q
    ||||||| ||||||||||||||||| ||||||||||||    
T  23662437 taattaccgagggaataatccctcaataatgctttgtc 23662400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 86
Target Start/End: Complemental strand, 23666689 - 23666652
Alignment:
Q  49 taattactgagggaataatccctcagtaatgctttgtc 86  Q
    ||||||| ||||||||||||||||| ||||||||||||    
T  23666689 taattaccgagggaataatccctcaataatgctttgtc 23666652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 87
Target Start/End: Complemental strand, 19285216 - 19285137
Alignment:
Q  9 gattattctgcgagtaattactggcggaatagtgcatcca-taattactgagggaataatccctcagtaatgctttgtca 87  Q
    |||| |||||| ||||||||||| ||| || || |  ||| |||||||||||||||||||||||||||||||||| ||||    
T  19285216 gatttttctgccagtaattactgacgggattgttctgccagtaattactgagggaataatccctcagtaatgcttcgtca 19285137  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 93
Target Start/End: Original strand, 27767507 - 27767540
Alignment:
Q  60 ggaataatccctcagtaatgctttgtcagtacta 93  Q
    ||||||||||||||||||||||||||||| ||||    
T  27767507 ggaataatccctcagtaatgctttgtcagaacta 27767540  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 96
Target Start/End: Complemental strand, 17131351 - 17131315
Alignment:
Q  60 ggaataatccctcagtaatgctttgtcagtactacct 96  Q
    ||||||||||||||||||||||||||||  |||||||    
T  17131351 ggaataatccctcagtaatgctttgtcaaaactacct 17131315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 96
Target Start/End: Complemental strand, 32243646 - 32243610
Alignment:
Q  60 ggaataatccctcagtaatgctttgtcagtactacct 96  Q
    ||||||||||||||||||||||||||||  |||||||    
T  32243646 ggaataatccctcagtaatgctttgtcaaaactacct 32243610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 87
Target Start/End: Original strand, 35085298 - 35085336
Alignment:
Q  49 taattactgagggaataatccctcagtaatgctttgtca 87  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  35085298 taattactgagggaataatccctcagtaatgcattgtca 35085336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 82
Target Start/End: Complemental strand, 35085303 - 35085270
Alignment:
Q  49 taattactgagggaataatccctcagtaatgctt 82  Q
    |||||||||| |||||||||||||||||||||||    
T  35085303 taattactgacggaataatccctcagtaatgctt 35085270  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 87
Target Start/End: Complemental strand, 27408166 - 27408128
Alignment:
Q  49 taattactgagggaataatccctcagtaatgctttgtca 87  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  27408166 taattactgagggaataatccctcagtaatactttgtca 27408128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 98
Target Start/End: Complemental strand, 22831358 - 22831316
Alignment:
Q  56 tgagggaataatccctcagtaatgctttgtcagtactaccttt 98  Q
    |||||||||||||||||| |||||| ||||||| |||||||||    
T  22831358 tgagggaataatccctcaataatgcgttgtcagaactaccttt 22831316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 63222 - 63258
Alignment:
Q  60 ggaataatccctcagtaatgctttgtcagtactacct 96  Q
    ||||||||||||||||||||||||||||  |||||||    
T  63222 ggaataatccctcagtaatgctttgtcaaaactacct 63258  T

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