View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2605_low_39 (Length: 314)
Name: NF2605_low_39
Description: NF2605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2605_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 11 - 290
Target Start/End: Complemental strand, 10443357 - 10443071
Alignment:
| Q |
11 |
cataggaattgtgagacgctaaaaagtaatataagaacacaaatatggttctttacattgaagtagaaatgagtaatagttcttaaatcctacgtgacat |
110 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
10443357 |
cataggaattgtgagaccctaaaaagtaatataagaacacaaatatggttctttacattgaagtagaaatgagtgatagttcttaaatcctacgtgacat |
10443258 |
T |
|
| Q |
111 |
ccatgagcccacaaaaaatagttgaagaacaaaaatttggttctaacattgtagatgctattatattaccatgcatttttacaaacggtagataaaacga |
210 |
Q |
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|
||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
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| T |
10443257 |
ccatgagcccacaaaaaatggttgaagaacaaaattttggttctaacattgtagatgctattatatcaccatgcatttttacaaacggtagatacaacga |
10443158 |
T |
|
| Q |
211 |
tgaatatgatcatgc-------tgaaactctcctcttnnnnnnngatcatgcccagaccgagattctaaaatcctcgttttagacct |
290 |
Q |
| |
|
||||||||||||||| ||||||||||||| | ||||||||||| | |||| ||||||||||||||||||||||| |
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| T |
10443157 |
tgaatatgatcatgctgaatgctgaaactctcctcataaaaaaagatcatgcccatattgagactctaaaatcctcgttttagacct |
10443071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 29 - 169
Target Start/End: Complemental strand, 36797301 - 36797161
Alignment:
| Q |
29 |
ctaaaaagtaatataagaa-cacaaatatggttctttacattgaagtagaaatgagtaatagttcttaaatcctacgtgacatccatgagcccacaaaaa |
127 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||| ||||| |||| |||| ||| |||||||||||||| || ||| |||| |||| |||||||||| |
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| T |
36797301 |
ctaaaaagtaatataagaaacataaatatggttcttg-cattggagtaaaaataagtgatagttcttaaatcgtatgtgtcatctatgaacccacaaaaa |
36797203 |
T |
|
| Q |
128 |
atagttgaagaacaaaaatttggttctaacattgtagatgct |
169 |
Q |
| |
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| ||||| |||||| ||| |||||| |||| |||||||| |
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|
| T |
36797202 |
ttgattgaaaaacaaatttttagttctagcattatagatgct |
36797161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 108; Significance: 3e-54; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 16 - 167
Target Start/End: Original strand, 9824110 - 9824261
Alignment:
| Q |
16 |
gaattgtgagacgctaaaaagtaatataagaacacaaatatggttctttacattgaagtagaaatgagtaatagttcttaaatcctacgtgacatccatg |
115 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||| ||||||| ||| |
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| T |
9824110 |
gaattgtgagaccctaaaaagtaatataagaacacaaatatggttctttacattggagtagaaatgagttatagttcttgaatcctatgtgacatttatg |
9824209 |
T |
|
| Q |
116 |
agcccacaaaaaatagttgaagaacaaaaatttggttctaacattgtagatg |
167 |
Q |
| |
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| ||||||||||||||||||||||||||| ||| |||||| ||||||||||| |
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|
| T |
9824210 |
aacccacaaaaaatagttgaagaacaaaattttagttctagcattgtagatg |
9824261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 130
Target Start/End: Complemental strand, 42835084 - 42834980
Alignment:
| Q |
29 |
ctaaaaagtaatataagaacacaaatatggttctttacattga---agtagaaatgagtaatagttcttaaatcctacgtgacatccatgagcccacaaa |
125 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| ||||||||| | | |||||||||||||| || ||||||||||| | |||||| |
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| T |
42835084 |
ctaaaaagtaatataagaacataaatatggttctttacattattagagtagaaataaatgatagttcttaaatcatatgtgacatccataggttcacaaa |
42834985 |
T |
|
| Q |
126 |
aaata |
130 |
Q |
| |
|
||||| |
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|
| T |
42834984 |
aaata |
42834980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 29 - 169
Target Start/End: Complemental strand, 10230935 - 10230795
Alignment:
| Q |
29 |
ctaaaaagtaatataagaacacaaatatggttctttacattgaagtagaaatgagtaatagttcttaaatcctacgtgacatccatgagcccac-aaaaa |
127 |
Q |
| |
|
||||||||||||||||||| | |||||||||| ||| ||||| |||| |||| | | ||| |||||||||| || ||| |||||||||| || ||||| |
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|
| T |
10230935 |
ctaaaaagtaatataagaatataaatatggtt-tttgcattggagtaaaaataattgataattcttaaatcttatgtgtcatccatgagtttacaaaaaa |
10230837 |
T |
|
| Q |
128 |
atagttgaagaacaaaaatttggttctaacattgtagatgct |
169 |
Q |
| |
|
|| |||||||| |||| |||||||||| |||||||||||| |
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|
| T |
10230836 |
atgattgaagaataaaattttggttctagaattgtagatgct |
10230795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 16 - 169
Target Start/End: Original strand, 12191137 - 12191290
Alignment:
| Q |
16 |
gaattgtgagacgctaaaaagtaatataagaacacaaatatggttctttacattgaagtagaaatgagtaatagttcttaaatcctacgtgacatccatg |
115 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||||||||| |||||||| ||| ||||||||||||| |||||||||||||| || |||| ||||||| |
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|
| T |
12191137 |
gaattgtgggaccttaaaaagtaatataagaacacaaatatgattctttaccttggagtagaaatgagtgatagttcttaaatcttatgtgatatccatg |
12191236 |
T |
|
| Q |
116 |
agcccacaaaaaatagttgaagaacaaaaatttggttctaacattgtagatgct |
169 |
Q |
| |
|
| |||||||||||| |||||||||||||| |||| |||| ||||||||||||| |
|
|
| T |
12191237 |
aacccacaaaaaatggttgaagaacaaaattttgactctagcattgtagatgct |
12191290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 16 - 169
Target Start/End: Complemental strand, 3606355 - 3606202
Alignment:
| Q |
16 |
gaattgtgagacgctaaaaagtaatataagaacacaaatatggttctttacattgaagtagaaatgagtaatagttcttaaatcctacgtgacatccatg |
115 |
Q |
| |
|
|||||||| || |||| |||||||| |||||||||||||| ||| ||||| ||||| ||||||||||| ||| ||||||||| ||| ||| |||| ||| |
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| T |
3606355 |
gaattgtggaaccctaataagtaatacaagaacacaaatatagttttttacgttgaaatagaaatgagtgataattcttaaattctatgtggcatctatg |
3606256 |
T |
|
| Q |
116 |
agcccacaaaaaatagttgaagaacaaaaatttggttctaacattgtagatgct |
169 |
Q |
| |
|
| |||| ||||||| |||||||||||||| |||||||||| || ||||||||| |
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|
| T |
3606255 |
aacccataaaaaatggttgaagaacaaaattttggttctaggatcgtagatgct |
3606202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 18 - 168
Target Start/End: Complemental strand, 190558 - 190409
Alignment:
| Q |
18 |
attgtgagacgctaaaaagtaatataagaacacaaatatggttctttacattgaagtagaaatgagtaatagttcttaaatcctacgtgacatccatgag |
117 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||| |||| || || ||||||||||| || ||| |||||||| |
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|
| T |
190558 |
attgtgagaccctaaaaagtaatataagaacacaaatatggttcttg-cattggagtaaaaataagcgatggttcttaaatcttatgtgtcatccatgga |
190460 |
T |
|
| Q |
118 |
cccacaaaaaatagttgaagaacaaaaatttggttctaacattgtagatgc |
168 |
Q |
| |
|
|||||||||||| ||||||||||||| ||| ||||||||||||||||||| |
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|
| T |
190459 |
cccacaaaaaatgattgaagaacaaaattttagttctaacattgtagatgc |
190409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 29 - 169
Target Start/End: Original strand, 3812519 - 3812658
Alignment:
| Q |
29 |
ctaaaaagtaatataagaacacaaatatggttctttacattgaagtagaaatgagtaatagttcttaaatcctacgtgacatccatgagcccacaaaaaa |
128 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||| |||| |||| | | |||||||||||||| || ||| |||| ||| | |||||||||| |
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|
| T |
3812519 |
ctaaaaagtaatataagaacacaaatatgattcttg-cattagagtaaaaataaatgatagttcttaaatcttatgtgtcatctatgggtccacaaaaaa |
3812617 |
T |
|
| Q |
129 |
tagttgaagaacaaaaatttggttctaacattgtagatgct |
169 |
Q |
| |
|
| |||||||| |||| |||| ||||| ||||||||||||| |
|
|
| T |
3812618 |
tgattgaagaataaaattttgattctagcattgtagatgct |
3812658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 156
Target Start/End: Complemental strand, 35794806 - 35794711
Alignment:
| Q |
63 |
ttacattgaagtagaaatgagtaatagttcttaaatcctacgtgacatccatgagcccacaa--aaaatagttgaagaacaaaaatttggttctaa |
156 |
Q |
| |
|
|||||||| |||||||| |||| || |||||||||| || |||||||||||| |||||| |||||| ||||||||||||| |||| |||||| |
|
|
| T |
35794806 |
ttacattggagtagaaacgagtgatgattcttaaatcatatgtgacatccatggaaccacaattaaaataattgaagaacaaaattttgattctaa |
35794711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 29 - 169
Target Start/End: Complemental strand, 37730558 - 37730419
Alignment:
| Q |
29 |
ctaaaaagtaatataagaacacaaatatggttctttacattgaagtagaaatgagtaatagttcttaaatcctacgtgacatccatgagcccacaaaaaa |
128 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |||| |||| |||||||| || ||||||||||| || ||| |||||||| | |||||||||| |
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|
| T |
37730558 |
ctaaaaactaatataagaacacaaatatggttcttgt-attggagtataaatgagtgatggttcttaaatcttatgtgtcatccatgggtccacaaaaaa |
37730460 |
T |
|
| Q |
129 |
tagttgaagaacaaaaatttggttctaacattgtagatgct |
169 |
Q |
| |
|
| ||||||||||||| |||||||||| |||| |||||||| |
|
|
| T |
37730459 |
tgattgaagaacaaaattttggttctagcattatagatgct |
37730419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 29 - 169
Target Start/End: Complemental strand, 28843751 - 28843612
Alignment:
| Q |
29 |
ctaaaaagtaatataagaacacaaatatggttctttacattgaagtagaaatgagtaatagttcttaaatcctacgtgacatccatgagcccacaaaaaa |
128 |
Q |
| |
|
|||||||||||| |||||||||||||||||| ||| ||||| |||| |||||||| || |||||| |||| || ||| ||| |||| || ||||||||| |
|
|
| T |
28843751 |
ctaaaaagtaattgaagaacacaaatatggtt-tttgcattggagtaaaaatgagtgatggttcttgaatcttatgtgtcattcatgggcacacaaaaaa |
28843653 |
T |
|
| Q |
129 |
tagttgaagaacaaaaatttggttctaacattgtagatgct |
169 |
Q |
| |
|
| ||||||||||||| |||||||||| ||||||| ||||| |
|
|
| T |
28843652 |
tgattgaagaacaaaattttggttctagcattgtatatgct |
28843612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 82
Target Start/End: Original strand, 10866829 - 10866869
Alignment:
| Q |
42 |
taagaacacaaatatggttctttacattgaagtagaaatga |
82 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||| |||||| |
|
|
| T |
10866829 |
taagaacacaaatattgttctttgcattgaagtaaaaatga |
10866869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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