View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2605_low_4 (Length: 689)
Name: NF2605_low_4
Description: NF2605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2605_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 16 - 210
Target Start/End: Original strand, 41360153 - 41360347
Alignment:
| Q |
16 |
ccattatgttaccgttgcaatttactcggtcattatgctatgtccacgtttctttttcacatgttaacgtacatagtcaatactattaataaaaacggtt |
115 |
Q |
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| T |
41360153 |
ccattatgttaccgttgcaatttactcggtcattatgctatgtccacgtttctttttcacatgttaacgtacatagtcaatactattaataaaaacggtt |
41360252 |
T |
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| Q |
116 |
ttgtagtttgagaagattgatgtgatattaaattaagggggttatatatgtagtgaaaactgtgatgaggaaaggagatatatacatgtagatta |
210 |
Q |
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| T |
41360253 |
ttgtagtttgagaagattggtgtgatattaaattaagggggttatatatgtagtgaaaactgtgacgaggaaaggagatatatacatgtagatta |
41360347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 221 - 409
Target Start/End: Original strand, 41360429 - 41360617
Alignment:
| Q |
221 |
agcatctaaaaagtggttcttgagaccttgttaattcacgtgtggttttagtaagaagtgactggtatgagaccaactgcatcaataactcatccgtgac |
320 |
Q |
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| T |
41360429 |
agcatccaaaaagtggttcttgagaccttgttaattcacgtgcggtcttaataagaagtgactgatatgaggccaactgcatcagtaactcatctgtggc |
41360528 |
T |
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| Q |
321 |
ggcgaaatactcttaagcccagtgcattgtatgcctcggtcaataagaatgataagttttctattctttgtttaatgtgatgaagagtc |
409 |
Q |
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| T |
41360529 |
ggcgaaatactcttaagcccattgcattgcacgcctgagtcaataacaatgataagttttctattctttgtttaatgtgatgaagagtc |
41360617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 477 - 689
Target Start/End: Original strand, 41360684 - 41360895
Alignment:
| Q |
477 |
catcaatcttgtgtaatcacaaaaacatatcacttgttcattattaacatcannnnnnnnagcaaatgatgaatccagattgctttaaacatgaatcaaa |
576 |
Q |
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| T |
41360684 |
catcaatcttgtgtaatcacaaaaacatatcatttgttcattattaacatcattttttt-agcaaatgatgaatccagattgctttaa-catgcatcaaa |
41360781 |
T |
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| Q |
577 |
acatataatatgcaaaagtnnnnnnnnnnnnnnn-taatggaagcatatgaaacaacacaaatgaaacataaaataaatagggactttctaacaagtata |
675 |
Q |
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| T |
41360782 |
acatataatatgcaaaagtaaaaaataaaaataaataatggaagcatatgaaacaacacaaatgaaacataaaacaaatagggactttgtaacaagtaca |
41360881 |
T |
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| Q |
676 |
cttgttaaggattc |
689 |
Q |
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| T |
41360882 |
cttgttaaagattc |
41360895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 207 - 281
Target Start/End: Original strand, 17895599 - 17895673
Alignment:
| Q |
207 |
attaagttctcttgagcatctaaaaagtggttcttgagaccttgttaattcacgtgtggttttagtaagaagtga |
281 |
Q |
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| T |
17895599 |
attaagttcctttgagcatccaaaaagttgtttttgagaccttgctagttcatgtgcggtgttagcaagaagtga |
17895673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 311 - 409
Target Start/End: Original strand, 12273685 - 12273782
Alignment:
| Q |
311 |
catccgtgacggcgaaatactcttaagcccagtgcattgtatgcctcggtcaataagaatgataagttttctattctttgtttaatgtgatgaagagtc |
409 |
Q |
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| T |
12273685 |
catccgggatggcaaaatactcttaagcccggtgcattgcacgcctcaatcaataatatcgataag-tttctattctctatttaatttgatgaagagtc |
12273782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 228 - 284
Target Start/End: Original strand, 807662 - 807718
Alignment:
| Q |
228 |
aaaaagtggttcttgagaccttgttaattcacgtgtggttttagtaagaagtgactg |
284 |
Q |
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| T |
807662 |
aaaaagttgttcatgagaccttgttaattcacgtgcggtgctagtaaaaaatgactg |
807718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 611 - 653
Target Start/End: Original strand, 1119857 - 1119899
Alignment:
| Q |
611 |
taatggaagcatatgaaacaacacaaatgaaacataaaataaa |
653 |
Q |
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| T |
1119857 |
taatggaagtatatgaaaaaacacaaatgaaacataaaataaa |
1119899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 321 - 409
Target Start/End: Complemental strand, 44686189 - 44686101
Alignment:
| Q |
321 |
ggcgaaatactcttaagcccagtgcattgt--atgcctcggtcaataagaatgataagttttctattctttgtttaatgtgatgaagagtc |
409 |
Q |
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| T |
44686189 |
ggcgaaatactcttaagcccagtgcattttgcatgcctcagtcaataatc--gagaagttttctattctctatttaatttgatgaacagtc |
44686101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 229 - 284
Target Start/End: Complemental strand, 2079207 - 2079152
Alignment:
| Q |
229 |
aaaagtggttcttgagaccttgttaattcacgtgtggttttagtaagaagtgactg |
284 |
Q |
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| T |
2079207 |
aaaagtggttcatgagaccttgctaatttacgtgcggtgttagtaagacgtgactg |
2079152 |
T |
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