View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2605_low_40 (Length: 303)
Name: NF2605_low_40
Description: NF2605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2605_low_40 |
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Alignment Details
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 18 - 287
Target Start/End: Complemental strand, 4314864 - 4314595
Alignment:
| Q |
18 |
caagcatgggcatgtgtttctgatcatttcaatgaattcaaggttacaatggcaatcatggaggcaattactagaagtgcatgtcatataaataatatag |
117 |
Q |
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| T |
4314864 |
caagcatgggcatgtgtttctgatcatttcaatgaactcaaggttacaaaggcaatcatggaggcaattactagaagtgcatgtcatataaataatatag |
4314765 |
T |
|
| Q |
118 |
agttgcttcatctagatttgaaggaaaaactggctggaaagaagttcttaattgttttggatgatgtttggaccgaggattatgacgcttggaattcact |
217 |
Q |
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| T |
4314764 |
agttgcttcatctagatttgaaggaaaaactggctggaaagaagttcttaattgttttggatgatgtttggaccgaggattatgacgcttggaattcact |
4314665 |
T |
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| Q |
218 |
tttaagacctcttcatgatggcaccaggggaagtaaaattcttgtaacaacccgaagtaaaaaagttgct |
287 |
Q |
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| T |
4314664 |
tttaagacctcttcatgatggcaccaggggaagtaaaattcttgtaacaacccgaagtaaaaaagttgct |
4314595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 18 - 295
Target Start/End: Complemental strand, 4306002 - 4305725
Alignment:
| Q |
18 |
caagcatgggcatgtgtttctgatcatttcaatgaattcaaggttacaatggcaatcatggaggcaattactagaagtgcatgtcatataaataatatag |
117 |
Q |
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||||||||||| |||||||| || |||||| |||||||||| ||||||| |||||||||||||||| ||||||||||||| ||| ||||||||||||||| |
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| T |
4306002 |
caagcatgggcttgtgtttccgaccatttcgatgaattcaaagttacaaaggcaatcatggaggcagttactagaagtgcttgtaatataaataatatag |
4305903 |
T |
|
| Q |
118 |
agttgcttcatctagatttgaaggaaaaactggctggaaagaagttcttaattgttttggatgatgtttggaccgaggattatgacgcttggaattcact |
217 |
Q |
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| T |
4305902 |
agttgcttcatctagatttgaaggaaaaactggccggaaagaagttcttaattgttttggatgacgtttggactgaggattatgatgcttggaaatccct |
4305803 |
T |
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| Q |
218 |
tttaagacctcttcatgatggcaccaggggaagtaaaattcttgtaacaacccgaagtaaaaaagttgctcctatgct |
295 |
Q |
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| T |
4305802 |
tttaaggcctcttcagtacagtgacaaaggaagtaaaattcttgtaacaacccgtattaaaaaagttgcttctatgct |
4305725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 117 - 293
Target Start/End: Original strand, 4253720 - 4253896
Alignment:
| Q |
117 |
gagttgcttcatctagatttgaaggaaaaactggctggaaagaagttcttaattgttttggatgatgtttggaccgaggattatgacgcttggaattcac |
216 |
Q |
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||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||| | |
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| T |
4253720 |
gagttgcttcatcgtgatttgaaggaaaaactgactggaaaaaagttcttaattgttttggatgatgtatggaccgaggattatgacagctggaattctc |
4253819 |
T |
|
| Q |
217 |
ttttaagacctcttcatgatggcaccaggggaagtaaaattcttgtaacaacccgaagtaaaaaagttgctcctatg |
293 |
Q |
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| T |
4253820 |
ttttaaggcctcttcaatacggggctaagggaaataaaattcttgtaacaactcgtattgaaaaagttgcttctatg |
4253896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 105 - 293
Target Start/End: Original strand, 4246590 - 4246778
Alignment:
| Q |
105 |
ataaataatatagagttgcttcatctagatttgaaggaaaaactggctggaaagaagttcttaattgttttggatgatgtttggaccgaggattatgacg |
204 |
Q |
| |
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|||||||| | |||||| |||||| |||||||||||||||||| ||||||| |||||||| ||||||||||| |||||||||| | |||||||| || |
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| T |
4246590 |
ataaataacaaagagttacttcattgtgatttgaaggaaaaactgactggaaaaaagttcttgattgttttggacgatgtttggatcaaggattataaca |
4246689 |
T |
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| Q |
205 |
cttggaattcacttttaagacctcttcatgatggcaccaggggaagtaaaattcttgtaacaacccgaagtaaaaaagttgctcctatg |
293 |
Q |
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| T |
4246690 |
gttggaattctcttatgatgcctcttcaatacggagctaagggaagcaaaattcttgtaacaacgcgtagtgataaagttgcttctatg |
4246778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 18 - 293
Target Start/End: Original strand, 41933065 - 41933340
Alignment:
| Q |
18 |
caagcatgggcatgtgtttctgatcatttcaatgaattcaaggttacaatggcaatcatggaggcaattactagaagtgcatgtcatataaataatatag |
117 |
Q |
| |
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||||||||||| ||||||||||| |||||| |||||||||||||||||| |||||||||||||||| ||||||||||||| ||| ||||||||||||||| |
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| T |
41933065 |
caagcatgggcttgtgtttctgaccatttcgatgaattcaaggttacaaaggcaatcatggaggcagttactagaagtgcttgtaatataaataatatag |
41933164 |
T |
|
| Q |
118 |
agttgcttcatctagatttgaaggaaaaactggctggaaagaagttcttaattgttttggatgatgtttggaccgaggattatgacgcttggaattcact |
217 |
Q |
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|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||| | ||||||||||||||||| ||||||||||| || |
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| T |
41933165 |
agttgcttcatctagatttgaaggaaaaactgtccggaaagaagttcttaattgttttagatgatttctggaccgaggattatgatgcttggaattctct |
41933264 |
T |
|
| Q |
218 |
tttaagacctcttcatgatggcaccaggggaagtaaaattcttgtaacaacccgaagtaaaaaagttgctcctatg |
293 |
Q |
| |
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|||||| |||||||| |||| |||| |||||||||||||||||||||||||| | ||||||||||||| ||||| |
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| T |
41933265 |
tttaaggcctcttcaatatggtaccaagggaagtaaaattcttgtaacaacccatattaaaaaagttgcttctatg |
41933340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 124 - 269
Target Start/End: Complemental strand, 34802834 - 34802689
Alignment:
| Q |
124 |
ttcatctagatttgaaggaaaaactggctggaaagaagttcttaattgttttggatgatgtttggaccgaggattatgacgcttggaattcacttttaag |
223 |
Q |
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|||||| |||||||||||| || |||| |||||||||||||||||||| ||||||||||| ||||| |||||||||||| ||||||| ||| |||| |
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| T |
34802834 |
ttcatcaagatttgaaggagaagttggcgggaaagaagttcttaattgtattggatgatgtctggactgaggattatgacagttggaatattcttataag |
34802735 |
T |
|
| Q |
224 |
acctcttcatgatggcaccaggggaagtaaaattcttgtaacaacc |
269 |
Q |
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||| |||| || || | |||||||||||||||||||||||| |
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| T |
34802734 |
gccttttcaatgcggaactaaaggaagtaaaattcttgtaacaacc |
34802689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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