View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2605_low_53 (Length: 263)
Name: NF2605_low_53
Description: NF2605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2605_low_53 |
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Alignment Details
Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 121 - 255
Target Start/End: Original strand, 6729854 - 6729988
Alignment:
| Q |
121 |
gaacaacaattgctcttgattattaatataatttcaccactacctttcataannnnnnnatgtgtttttgctttcgatttaatgaatgaaagaaaggact |
220 |
Q |
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| T |
6729854 |
gaacaacacttgctattgattgttaatataattccatcactacctttcataattttttttttagtttttgctttcgatttaatgaatgaatgaaagaact |
6729953 |
T |
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| Q |
221 |
tttgcagtgagtcatgtgagaggaacttgatgatg |
255 |
Q |
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| T |
6729954 |
ttcgtagtgagtcaagtgaaaggaactttatgatg |
6729988 |
T |
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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 139 - 228
Target Start/End: Complemental strand, 42607441 - 42607352
Alignment:
| Q |
139 |
attattaatataatttcaccactacctttcataannnnnnnatgtgtttttgctttcgatttaatgaatgaaagaaaggacttttgcagt |
228 |
Q |
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| T |
42607441 |
attattaatatcattccaccactacctttcatatttcttttatgtgtttttgctttggattttatgaatgaaagaaaaaacttttgcagt |
42607352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 121 - 200
Target Start/End: Complemental strand, 45922568 - 45922489
Alignment:
| Q |
121 |
gaacaacaattgctcttgattattaatataatttcaccactacctttcataannnnnnnatgtgtttttgctttcgattt |
200 |
Q |
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| T |
45922568 |
gaacaacaattgctcttgattattattataattccaccactacctttcataatttatttatgtgtttttgctttcgattt |
45922489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 121 - 255
Target Start/End: Complemental strand, 35943430 - 35943294
Alignment:
| Q |
121 |
gaacaacaattgctcttgattattaatataatttcaccactacctttcataannnnnnnatgt--gtttttgctttcgatttaatgaatgaaagaaagga |
218 |
Q |
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| T |
35943430 |
gaacaacacttgctattgattgttaatataattccatcactacctttcatatttttttttttttagtttttgctttcgatttaatgaatgaaagaaagaa |
35943331 |
T |
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| Q |
219 |
cttttgcagtgagtcatgtgagaggaacttgatgatg |
255 |
Q |
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| T |
35943330 |
ctttcgtagtgagtcaagtgaaaggaactttatgatg |
35943294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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