View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2605_low_55 (Length: 250)
Name: NF2605_low_55
Description: NF2605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2605_low_55 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 15 - 250
Target Start/End: Complemental strand, 27913462 - 27913227
Alignment:
| Q |
15 |
aataagaacggaaatatttattgaaaatataaagatagttaataagcgtttgttaatatgtagttaaattgnnnnnnnaagtaggtagtttatttgttaa |
114 |
Q |
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| T |
27913462 |
aataagaacggaaatatttattgaaaatataaagatagttaataagcgtttgttaatatgtagttaaattgtttttttaagtaggtagtttatttgttaa |
27913363 |
T |
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| Q |
115 |
ttcatcacaggcgctctatatagagaatctcatatactcatttattatctttttcttttaacaatttttcaatatgaattctaagaatttttcccgtcta |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
27913362 |
ttcatcacaggcgctctatatagagaatctcatatactcatttattatctttttcttttaacaatttttcaatatgaattctaagaatttttctcgtcta |
27913263 |
T |
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| Q |
215 |
tctttgttatctcatcgtatgagatgaatcttcata |
250 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
27913262 |
tctttgttatctcatcgtatgagatgaatcttcata |
27913227 |
T |
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