View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2605_low_6 (Length: 652)
Name: NF2605_low_6
Description: NF2605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2605_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 588; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 588; E-Value: 0
Query Start/End: Original strand, 19 - 643
Target Start/End: Complemental strand, 42087431 - 42086801
Alignment:
| Q |
19 |
ccattattccactgcaatcatatcacaaatttggtgaaaatagattcaactgatcatacacaactagtttcgccggttattctagaatcatttcgttgaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42087431 |
ccattattccactgcaatcatatcacaaatttggtgaaaatagattcaactgatcatacacaactagtttcgccggttattctagaatcatttcgttgaa |
42087332 |
T |
|
| Q |
119 |
aatttgtttcttcgacttaggttcgatactctgacacaccggatattcagacttgagacttcaaaacaaaagttattcactca------ttcagtgtagt |
212 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
42087331 |
aatttgtttcttcgacttaggttcgatactctaacacaccggatattcagacttgagacttcaaaacaaaagttattcactcacgatcattcagtgtagt |
42087232 |
T |
|
| Q |
213 |
tttattgctcttcccagcagctgataagaactcatcaatacccctaacagatgaccctttaactccatcttcttctccatctttcacagcattccttatc |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42087231 |
tttattgctcttcccagcagctgataagaactcatcaatacccctaacagatgaccctttaactccatcttcttctccatctttcacagcattccttatc |
42087132 |
T |
|
| Q |
313 |
atatccttaatcttacaagcattctctctaatcttcaccccactctcactactctcacccataaccaactcaattttctcaacaatatcttcatacttca |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42087131 |
atatccttaatcttacaagcattctctctaatcttcaccccactctcactactctcacccataaccaactcaattttctcaacaatatcttcatacttca |
42087032 |
T |
|
| Q |
413 |
cttcacaactctttcctctagcaacctcaacacaaacacccatctcttcttccaacagcttacagttaaaaaactgctccgccgccatcggccacccaag |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
42087031 |
cttcacaactctttcctctagcaacctcaacacaaacacccatctcttcttccaacagcttacaattaaaaaactgctccgccgccatcggccacccaag |
42086932 |
T |
|
| Q |
513 |
aataggtacaccatgactcaatgattccaacactgagttccaaccacaatgactcaaaaacgcagaaactgatccatgtgataatatctcaacttgtggt |
612 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
42086931 |
aataggtacaccatgactcaatgattccaacaccgagttccaaccacaatgactcaaaaacgcagaaactgatccatgtgacaatatctcaacttgtggt |
42086832 |
T |
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| Q |
613 |
gcccaatcatttactattatacctccctttg |
643 |
Q |
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||||||||||||||||||||||||| ||||| |
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| T |
42086831 |
gcccaatcatttactattatacctctctttg |
42086801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 572
Target Start/End: Original strand, 24462261 - 24462298
Alignment:
| Q |
535 |
gattccaacactgagttccaaccacaatgactcaaaaa |
572 |
Q |
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|||||||||||||||||||| ||||||||| ||||||| |
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| T |
24462261 |
gattccaacactgagttccatccacaatgagtcaaaaa |
24462298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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