View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2605_low_65 (Length: 215)
Name: NF2605_low_65
Description: NF2605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2605_low_65 |
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Alignment Details
Target: chr3 (Bit Score: 109; Significance: 5e-55; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 81 - 197
Target Start/End: Complemental strand, 432698 - 432582
Alignment:
| Q |
81 |
cttttggggggagacttcaatcaagatacaaggaaaaaccttaaaccagcaaatgttcgttataaagattaatagaataataattaattaaccgagactt |
180 |
Q |
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| T |
432698 |
cttttggggggagacttcaatcaagatacaaggaaaaaccttaaaccagcaaatgttcgttataaagatgaatagaataataattaattaacctagactt |
432599 |
T |
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| Q |
181 |
ctcatttctaaggatct |
197 |
Q |
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| T |
432598 |
ctcatttctaaggatct |
432582 |
T |
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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 57
Target Start/End: Complemental strand, 432762 - 432723
Alignment:
| Q |
18 |
gaatattggtttaaaatacatacacatcacatacaacaac |
57 |
Q |
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| T |
432762 |
gaatattggtttaaaatacatacacatcacttacaacaac |
432723 |
T |
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