View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2605_low_66 (Length: 211)

Name: NF2605_low_66

Description: NF2605

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF2605_low_66

[»] chr3 (1 HSPs)

[»] chr1 (1 HSPs)

Target: chr3 (Bit Score: 176; Significance: 5e-95; HSPs: 1)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 176; E-Value: 5e-95

Query Start/End: Original strand, 18 - 197

Target Start/End: Complemental strand, 40376199 - 40376020

Alignment:

Q	18	ataaaaacaaatgaaaatcatcactcaccattagtcccaagaacatgcagagcaactacaagatcaccaggttgagcaactttaaccaaagcccaagtaa	117	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	40376199	ataaaaacaaatgaaaattatcactcaccattagtcccaagaacatgcagagcaactacaagatcaccaggttgagcaactttaaccaaagcccaagtaa	40376100	T

Q	118	gaagctctttgcttggtgaatccattttcactcccaccaccaccgtccggccatcggagccaccctcatcacaagttttt	197	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	40376099	gaagctctttgcttggtgaatccattttcactcccaccaccaccgtccggccatcggagccaccctcatcacaagttttt	40376020	T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)

Name: chr1

Description:

Target: chr1; HSP #1

Raw Score: 29; E-Value: 0.0000003

Query Start/End: Original strand, 56 - 108

Target Start/End: Complemental strand, 10257668 - 10257616

Alignment:

Q	56	aagaacatgcagagcaactacaagatcaccaggttgagcaactttaaccaaag	108	Q
		\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|
T	10257668	aagaacatgaagagcaagaataagatcaccaggttgagcaacattgaccaaag	10257616	T

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