View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2605_low_67 (Length: 205)
Name: NF2605_low_67
Description: NF2605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2605_low_67 |
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| [»] scaffold0018 (2 HSPs) |
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| [»] scaffold0099 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 16 - 189
Target Start/End: Complemental strand, 33114360 - 33114187
Alignment:
| Q |
16 |
aatatatatcatataacccaagtaaccttgcacttcaagcatttgttgaagctgcaaataaattatcacaaggaaagttcagacttgaacaattctcaga |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33114360 |
aatatatatcatataacccaagtaaccttgcacttcaagcatttgttgaagctgcaaataaattatcacaaggaaagttcagacttgaacaattctcaga |
33114261 |
T |
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| Q |
116 |
aaatatcttgtctagtaaatttgaaacactgagcgcaaagactttctccaagaatggagaaaatcagaatatcc |
189 |
Q |
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| T |
33114260 |
aaagatcttgcctggtaaatttgaaagactgagcgcaaagactttctccaagaatggagaaaatcagaatatcc |
33114187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 100; Significance: 1e-49; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 62 - 173
Target Start/End: Original strand, 24897681 - 24897792
Alignment:
| Q |
62 |
tgaagctgcaaataaattatcacaaggaaagttcagacttgaacaattctcagaaaatatcttgtctagtaaatttgaaacactgagcgcaaagactttc |
161 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||| |
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| T |
24897681 |
tgaagctgcaaataaattatcacaaggaaagttcagacttgaacaattctcagaaaagattttgtctagtaaatttgaaagactgagcgcaaagactttc |
24897780 |
T |
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| Q |
162 |
tccaagaatgga |
173 |
Q |
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| T |
24897781 |
tccaagaatgga |
24897792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 62 - 173
Target Start/End: Original strand, 24987287 - 24987398
Alignment:
| Q |
62 |
tgaagctgcaaataaattatcacaaggaaagttcagacttgaacaattctcagaaaatatcttgtctagtaaatttgaaacactgagcgcaaagactttc |
161 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||| |
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| T |
24987287 |
tgaagctgcaaataaattatcacaagtaaagttcagacttgaacaattctcagaaaagattttgtctagtaaatttgaaagactgagcgcaaagactttc |
24987386 |
T |
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| Q |
162 |
tccaagaatgga |
173 |
Q |
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|||||||||||| |
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| T |
24987387 |
tccaagaatgga |
24987398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 62 - 173
Target Start/End: Original strand, 24909784 - 24909895
Alignment:
| Q |
62 |
tgaagctgcaaataaattatcacaaggaaagttcagacttgaacaattctcagaaaatatcttgtctagtaaatttgaaacactgagcgcaaagactttc |
161 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| || |||||||||| ||||||||||||||||||| |
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| T |
24909784 |
tgaagctgcaaataaattatcacaaggaaagttcagacttgaacaattctcagaaaagattttgtcaagaaaatttgaaagactgagcgcaaagactttc |
24909883 |
T |
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| Q |
162 |
tccaagaatgga |
173 |
Q |
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|||||||||||| |
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| T |
24909884 |
tccaagaatgga |
24909895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 2)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 58 - 117
Target Start/End: Original strand, 148961 - 149020
Alignment:
| Q |
58 |
ttgttgaagctgcaaataaattatcacaaggaaagttcagacttgaacaattctcagaaa |
117 |
Q |
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| T |
148961 |
ttgttgaagctgcaaataaatcatcacaaggaaagttaagacttgaagaaatctccgaaa |
149020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 58 - 117
Target Start/End: Original strand, 140352 - 140411
Alignment:
| Q |
58 |
ttgttgaagctgcaaataaattatcacaaggaaagttcagacttgaacaattctcagaaa |
117 |
Q |
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| T |
140352 |
ttgttgaaactgcaaaaaaatcatcacaaggaaagttaagacttgaagaaatctccgaaa |
140411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0099 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0099
Description:
Target: scaffold0099; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 170
Target Start/End: Original strand, 23430 - 23546
Alignment:
| Q |
64 |
aagctgcaaa--taaattatcacaaggaaagttcagacttg-aacaattctcag--aaaatatctt--gt-ctagt-aaatttgaaacactgagcgc-aa |
153 |
Q |
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|||||||||| |||||||||||||| |||||||||||||| |||||||||||| |||| || || || ||||| |||||||||| ||||||||| || |
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| T |
23430 |
aagctgcaaaattaaattatcacaagtaaagttcagacttgaaacaattctcagtaaaaagatttttggtcctagtaaaatttgaaagactgagcgcaaa |
23529 |
T |
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| Q |
154 |
agactttctccaagaat |
170 |
Q |
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| T |
23530 |
agactttctccaagaat |
23546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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