View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2605_low_7 (Length: 622)
Name: NF2605_low_7
Description: NF2605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2605_low_7 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 463; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 51 - 618
Target Start/End: Original strand, 40723818 - 40724373
Alignment:
| Q |
51 |
aatgcccaacttacatcatcagagagcttcatgtttttggtatgtatgcgaaggacttcaagtcgcccaatttcatctggaacaccaatatcgatttccc |
150 |
Q |
| |
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|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40723818 |
aatgtccaacttacatcatgagagagcttcatgtttttggtatgtatgcgaaggacttcaagtcgcccaatttcatctggaacaccaatatcgatttccc |
40723917 |
T |
|
| Q |
151 |
tatcaaatctaccaaaccttctcaatgccgggtcaatgctattggggcgattagtggcccccatgacaataacatgagcacgggattttagcccatccat |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40723918 |
tatcaaatctaccaaaccttctcaatgccgggtcaatgctattggggcgattagtggcccccatgacaataacatgagcacgggattttagcccatccat |
40724017 |
T |
|
| Q |
251 |
aagagtcagaagttgtgaaacaatccttctttctacttcaccatttgtcttgtcccgcttgggtgcaatagaatcaatttcatcaataaagatgatggat |
350 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40724018 |
aagagtcagaagttgtgaaacaatccttctttctacttcaccatttgtcttgtcccgcttgggtgcaatagaatcaatttcatcaataaagatgatggat |
40724117 |
T |
|
| Q |
351 |
ggtgcattcttttctgcttcgtcaaatgctttcctaagattgctttcactctctccagccattttggacataatctctggtccattaatacaaaagaaga |
450 |
Q |
| |
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|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
40724118 |
ggtgcattcttttctgcttcttcaaacgctttcctaagattgctttcactctctccagccagtttggacataatctctggtccattaatacaaaagaaga |
40724217 |
T |
|
| Q |
451 |
aagctccagtttcattagcaatagctcttgctattaatgtctttccggtacctggtggtccagaaagcaaaattcctttaggtgctttcacaccaattga |
550 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||| | |||||| |||||| | || ||||||||||| |||| ||||||||||||||| |
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| T |
40724218 |
aagctccagtttcattagcaacagctcttgctattaatgtctttccagaacctgggggtccatatagaaaaattcctttgggtggtttcacaccaattga |
40724317 |
T |
|
| Q |
551 |
cttaaaaagttgtggatgcctcagtggaagctcgaccaactcgcgaatctgtgccatttgcttcctaa |
618 |
Q |
| |
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||||||||||| ||||||||||||||||||| || |||||||||||||||||||||| |
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| T |
40724318 |
cttaaaaagtt------------gtggaagctcgaccaactcacggatctgtgccatttgcttcctaa |
40724373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 234 - 622
Target Start/End: Complemental strand, 40666066 - 40665677
Alignment:
| Q |
234 |
gattttagcccatccataagagtcagaagttgtgaaacaatccttctttctacttcaccatttgtcttgtcccgcttgggtgcaatagaatcaatttcat |
333 |
Q |
| |
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|||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||| |
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| T |
40666066 |
gattctagcccatccataagagtcagaagttgtgagacaatccttctttcaacttcaccgtttgtcttctcccgcttgggtgcaatagaatcaatttcat |
40665967 |
T |
|
| Q |
334 |
caa-taaagatgatggatggtgcattcttttctgcttcgtcaaatgctttcctaagattgctttcactctctccagccattttggacataatctctggtc |
432 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
40665966 |
caaataaagatgatggatggtgcattcttttctgcttcttcaaacgctttcctaagattgctttcactctctccagccagtttggacataatctctggtc |
40665867 |
T |
|
| Q |
433 |
cattaatacaaaagaagaaagctccagtttcattagcaatagctcttgctattaatgtctttccggtacctggtggtccagaaagcaaaattcctttagg |
532 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
40665866 |
cattaatacaaaagaagaaagctccagtttcattagcaatagctcttgctattaatgtctttccggtacctgggggtccagaaagcaaaattcctttagg |
40665767 |
T |
|
| Q |
533 |
tgctttcacaccaattgacttaaaaagttgtggatgcctcagtggaagctcgaccaactcgcgaatctgtgccatttgcttcctaacacc |
622 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40665766 |
tgctttcgcaccaattgacttaaaaagttgtggatgcctaagtggaagctcgaccaactcgcgaatctgtgccatttgcttcctaacacc |
40665677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 51 - 178
Target Start/End: Complemental strand, 40666229 - 40666102
Alignment:
| Q |
51 |
aatgcccaacttacatcatcagagagcttcatgtttttggtatgtatgcgaaggacttcaagtcgcccaatttcatctggaacaccaatatcgatttccc |
150 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40666229 |
aatgtccaacttacatcatgagagagcttcatgtttttggtatgtatgcgaaggacttcaagtcgcccaatttcatctggaacaccaatatcgatttccc |
40666130 |
T |
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| Q |
151 |
tatcaaatctaccaaaccttctcaatgc |
178 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
40666129 |
tatcaaatctaccaaaccttctcaatgc |
40666102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 140; Significance: 5e-73; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 75 - 622
Target Start/End: Complemental strand, 27977635 - 27977088
Alignment:
| Q |
75 |
agcttcatgtttttggtatgtatgcgaaggacttcaagtcgcccaatttcatctggaacaccaatatcgatttccctatcaaatctaccaaaccttctca |
174 |
Q |
| |
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|||||||| ||||| ||||| ||||| || || ||||| || |||| ||||||||| ||||||||||| || |||| |||||| || |||||||| | | |
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| T |
27977635 |
agcttcatattttttgtatggatgcggagaacctcaagacgtccaacttcatctggtacaccaatatcaatctcccgatcaaaccttccaaacctccgaa |
27977536 |
T |
|
| Q |
175 |
atgccgggtcaatgctattggggcgattagtggcccccatgacaataacatgagcacgggattttagcccatccataagagtcagaagttgtgaaacaat |
274 |
Q |
| |
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|| ||||| ||||||||||| ||||| || || ||||| ||||| ||||| ||||||||||| ||||||||||| || |||| || || |||||||| |
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| T |
27977535 |
gagcagggtcgatgctattgggacgatttgttgctcccataacaattacatgtgcacgggatttaagcccatccatgagggtcaagagctgggaaacaat |
27977436 |
T |
|
| Q |
275 |
ccttctttctacttcaccatttgtcttgtcccgcttgggtgcaatagaatcaatttcatcaataaagatgatggatggtgcattcttttctgcttcgtca |
374 |
Q |
| |
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|||| || ||||||||||| ||||| |||| ||| || ||||| || || || |||||||| |||||||| || ||||||||||| || ||||| || |
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| T |
27977435 |
tcttcgctcaacttcaccattagtcttctccctctttggagcaatggagtctatctcatcaatgaagatgattgagggtgcattcttctcagcttcttcg |
27977336 |
T |
|
| Q |
375 |
aatgctttcctaagattgctttcactctctccagccattttggacataatctctggtccattaatacaaaagaagaaagctccagtttcattagcaatag |
474 |
Q |
| |
|
||||| ||||| ||||| ||||||||||| ||||||| || ||||| ||||| || ||||| ||||| || |||||||| ||||||||||| |||| || |
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|
| T |
27977335 |
aatgccttcctcagattactttcactctcaccagccagctttgacatgatctcaggaccattgatacagaaaaagaaagcaccagtttcatttgcaacag |
27977236 |
T |
|
| Q |
475 |
ctcttgctattaatgtctttccggtacctggtggtccagaaagcaaaattcctttaggtgctttcacaccaattgacttaaaaagttgtggatgcctcag |
574 |
Q |
| |
|
||| ||| ||||| ||||| || | || || |||||| | | |||||| ||||| |||| ||||||||||| ||||| || | |||||||||||||| |
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| T |
27977235 |
ctcgtgcaattaaagtcttaccagatccagggggtccatacaacaaaatcccttttggtggcttcacaccaatagacttgaataattgtggatgcctcaa |
27977136 |
T |
|
| Q |
575 |
tggaagctcgaccaactcgcgaatctgtgccatttgcttcctaacacc |
622 |
Q |
| |
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||| || || |||| || |||||||| ||||| ||||| |||||||| |
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| T |
27977135 |
tggcagttccaccagttcccgaatctgagccatctgctttctaacacc |
27977088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 123; Significance: 7e-63; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 61 - 471
Target Start/End: Original strand, 41092655 - 41093065
Alignment:
| Q |
61 |
ttacatcatcagagagcttcatgtttttggtatgtatgcgaaggacttcaagtcgcccaatttcatctggaacaccaatatcgatttccctatcaaatct |
160 |
Q |
| |
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||||||| || | ||| ||||| || || ||||| || ||||| || ||||| ||||||| || ||||||||||||||||| || ||||||||||| || |
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| T |
41092655 |
ttacatcttcggcgagtttcatattctttgtatgaattcgaagaacctcaagacgcccaacctcgtctggaacaccaatatcaatctccctatcaaacct |
41092754 |
T |
|
| Q |
161 |
accaaaccttctcaatgccgggtcaatgctattggggcgattagtggcccccatgacaataacatgagcacgggattttagcccatccataagagtcaga |
260 |
Q |
| |
|
|||||||| || | ||| ||||||||||||||||| | ||| ||||| ||||| ||||| ||||| ||||| ||||| || ||||||||||| |||| |
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|
| T |
41092755 |
tccaaacctcctaagtgcagggtcaatgctattgggcctatttgtggctcccataacaattacatgtgcacgtgatttaagaccatccataagggtcaag |
41092854 |
T |
|
| Q |
261 |
agttgtgaaacaatccttctttctacttcaccatttgtcttgtcccgcttgggtgcaatagaatcaatttcatcaataaagatgatggatggtgcattct |
360 |
Q |
| |
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||||| || |||||||| || ||||||||||| | || || || ||||| || || || ||||| || |||||||||||||||||||| |||||||||| |
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| T |
41092855 |
agttgggagacaatcctcctctctacttcaccgtgagttttctctcgcttaggagctatggaatctatctcatcaataaagatgatggaaggtgcattct |
41092954 |
T |
|
| Q |
361 |
tttctgcttcgtcaaatgctttcctaagattgctttcactctctccagccattttggacataatctctggtccattaatacaaaagaagaaagctccagt |
460 |
Q |
| |
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| || ||||| |||||||| ||||| ||||||||||||||||| ||||| | ||| ||||| ||||| || |||||||| || || ||||| || || || |
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| T |
41092955 |
tctcagcttcctcaaatgccttccttagattgctttcactctcaccagcaagtttcgacattatctcagggccattaatgcagaaaaagaaggcacctgt |
41093054 |
T |
|
| Q |
461 |
ttcattagcaa |
471 |
Q |
| |
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|||||| |||| |
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| T |
41093055 |
ttcatttgcaa |
41093065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 354
Target Start/End: Complemental strand, 15690360 - 15690253
Alignment:
| Q |
245 |
atccataagagtcagaagttgtgaaacaatccttctttctacttcaccatttgtcttgtcccgcttgggtgcaatagaatcaatttcatcaataaagatg |
344 |
Q |
| |
|
|||||||||| ||| | |||||||||||||||||| || |||||| || |||||| || | |||||| || ||||||||| |||||||||||||| | |
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| T |
15690360 |
atccataagattcaagacttgtgaaacaatccttctatcaacttcatcacgtgtcttctctc--ttgggtacagtagaatcaaattcatcaataaagaag |
15690263 |
T |
|
| Q |
345 |
atggatggtg |
354 |
Q |
| |
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||| |||||| |
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| T |
15690262 |
atgaatggtg |
15690253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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