View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2605_low_8 (Length: 582)
Name: NF2605_low_8
Description: NF2605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2605_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 124 - 474
Target Start/End: Original strand, 25661197 - 25661559
Alignment:
| Q |
124 |
aacaaaatgaaatgttaaaagcttttcaagctgttgttgtagtcggatcagaggtggacaagctttgtgacagggtgaacc-atgtttcccatattatta |
222 |
Q |
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|||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
25661197 |
aacaaaatgaaatgttaaaagcttttcaagctgttgctgttgtcggatcagaggtggacaagctttgtgacagggtgagcccatgtttcccatattatta |
25661296 |
T |
|
| Q |
223 |
ttattc---------attatagaaacataataacttgaactagataatgaagatactactgattttaattttgcaggtgttggccttgg---tggctatc |
310 |
Q |
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||||| ||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||| |||||||| | ||| || |
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| T |
25661297 |
ttattattattatgtattatagaaacataata-ctggaactagataatgaagatattactgattttaattttgcaggtgtcggccttggacgttgctgtc |
25661395 |
T |
|
| Q |
311 |
aatggagggaccaaggtttctgacaaagaatttgctgtgactacagagttgcttatgaggaaattgctggagctggatggtattaaggctgaaggtgaag |
410 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25661396 |
aatggagggaccaaggtttctgacaaagaatttgttgtgactacagagttgcttatgaggaaattgctggagctggatggtattaaggctgaaggtgaag |
25661495 |
T |
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| Q |
411 |
ctaggttgcagagaaaagctgaggtaatgtttatggtgttgagagttactgacttgaaagctta |
474 |
Q |
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||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
25661496 |
ctaagttgcagagaaaagctgaggtaacgtttatggtgttgagagttactgacttgaaagctta |
25661559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 218; Significance: 1e-119; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 117 - 381
Target Start/End: Original strand, 12405718 - 12405985
Alignment:
| Q |
117 |
gttagacaacaaaatgaaatgttaaaagcttttcaagctgttgttgtagtcggatcagaggtggacaagctttgtgacagggtgaaccatgtttcccata |
216 |
Q |
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| T |
12405718 |
gttagacaacaaaatgaaatgttaaaagcttttcaagctgttgctgtagtaggatcagaggtggacaagctttgtgacagggtgagccatgtttcccata |
12405817 |
T |
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| Q |
217 |
ttattattattcattatagaaacataataacttgaactagataatgaagatactactgattttaattttgcaggtgttggccttg---gtggctatcaat |
313 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||| |
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| T |
12405818 |
ttattattattcattatagaaacattataacttgaactagataatgaagatattactgattttaattttgcaggtgttggccttggatgtggctgtcaat |
12405917 |
T |
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| Q |
314 |
ggagggaccaaggtttctgacaaagaatttgctgtgactacagagttgcttatgaggaaattgctgga |
381 |
Q |
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| T |
12405918 |
ggagggaccacggtttctgacaaagaatttattgtgactacagagttgcttatgaggaaattgctgga |
12405985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 182 - 474
Target Start/End: Complemental strand, 7769844 - 7769565
Alignment:
| Q |
182 |
caagctttgtgacagggtgaaccatgtttcccatattattattattcattatagaaacataataacttgaactagataatgaagatactactgattttaa |
281 |
Q |
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||||||||||| |||| ||| |||| ||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||| ||||| | |
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| T |
7769844 |
caagctttgtggcaggatgagccatctttccgatattattattatt-attatagaaacataataacttaaactagataatgaagatattactaattttta |
7769746 |
T |
|
| Q |
282 |
ttttgcaggtgttggccttgg---tggctatcaatggagggaccaaggtttctgacaaagaatttgctgtgactacagagttgcttatgaggaaattgct |
378 |
Q |
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||||||||||||| ||||||| ||||| ||||||||||||||||||||||| ||| ||||| | | |||||||||||||||| || |
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| T |
7769745 |
ttttgcaggtgttcgccttggatgtggctgtcaatggagggaccaaggtttcttaca--gaattggtt-------------tgcttatgaggaaattact |
7769661 |
T |
|
| Q |
379 |
ggagctggatggtattaaggctgaaggtgaagctaggttgcagagaaaagctgaggtaatgtttatggtgttgagagttactgacttgaaagctta |
474 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
7769660 |
ggagctggatggtattaaggctgaaggtgaagctaagttgcagagaaaagttgaggtaatgtttatggtgttgagagttactgacttgaaggctta |
7769565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 165; Significance: 6e-88; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 215 - 474
Target Start/End: Complemental strand, 23993800 - 23993552
Alignment:
| Q |
215 |
tattattattattcattatagaaacataataacttgaactagataatgaagatactactgattttaattttgcaggtgttggccttgg---tggctatca |
311 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||| ||||| ||| |
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| T |
23993800 |
tattattattatt-attatagaaacataataacttgaactagataatgaagatattactgatttttattctgcaggtgttggccttggatgtggctgtca |
23993702 |
T |
|
| Q |
312 |
atggagggaccaaggtttctgacaaagaatttgctgtgactacagagttgcttatgaggaaattgctggagctggatggtattaaggctgaaggtgaagc |
411 |
Q |
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|||||||||||||||||||| |||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23993701 |
atggagggaccaaggtttctaacaaagaattggtt-------------tgcttatgaggaaattgctggagctggatggtattaaggctgaaggtgaagc |
23993615 |
T |
|
| Q |
412 |
taggttgcagagaaaagctgaggtaatgtttatggtgttgagagttactgacttgaaagctta |
474 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23993614 |
taagttgcagagaaaagctgaggtaatgtttatggtgttgagagttactgacttgaaagctta |
23993552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 356 - 445
Target Start/End: Original strand, 5620413 - 5620502
Alignment:
| Q |
356 |
gagttgcttatgaggaaattgctggagctggatggtattaaggctgaaggtgaagctaggttgcagagaaaagctgaggtaatgtttatg |
445 |
Q |
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|||||||||||||| |||||||| | || ||||| ||| |||| ||||||||||| | |||||||||||||||||||||| | |||||| |
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| T |
5620413 |
gagttgcttatgagtcaattgctgaaactagatggaattgaggccgaaggtgaagcaaagttgcagagaaaagctgaggtagtttttatg |
5620502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 182 - 279
Target Start/End: Complemental strand, 51478894 - 51478792
Alignment:
| Q |
182 |
caagctttgtgacagggtgaaccatgtttcccatattattattattc-----attatagaaacataataacttgaactagataatgaagatactactgat |
276 |
Q |
| |
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|||||||||||||||| ||| |||| ||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||| | |
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| T |
51478894 |
caagctttgtgacaggatgagccatctttccgatattattattattattattattatagaaacataataacttgaactagattatgaagatattactggt |
51478795 |
T |
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| Q |
277 |
ttt |
279 |
Q |
| |
|
||| |
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|
| T |
51478794 |
ttt |
51478792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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