View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2606_high_14 (Length: 282)
Name: NF2606_high_14
Description: NF2606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2606_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 8 - 264
Target Start/End: Original strand, 5620406 - 5620659
Alignment:
| Q |
8 |
ataattctaaagaagtattattggttgatgaagtatattctcttgacaaatttctgtaatgagctcaattcatcatttaagtgaaacattaggattacag |
107 |
Q |
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| T |
5620406 |
ataattctaaagaagtattattggttgatgaagtatattctcttgacaaatttctgtaatgagctcaattcatcatttaagtgaaacattagaattacag |
5620505 |
T |
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| Q |
108 |
tctggactctggacagataaatgacatgatcagctcatagtttttgtaagttaaacagcaggttattctgaaaaaacagcaaattatcttttttgcttac |
207 |
Q |
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| T |
5620506 |
tctggactctggacagataaatgacatgatcagctcatagtttttgtaagttaaacagtaggttattctgaaaaaacagcaaattatcttttttgcttac |
5620605 |
T |
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| Q |
208 |
tcctgataaggaggtagtatttcttatgcagtgctgctgggccacataccatagtta |
264 |
Q |
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| T |
5620606 |
tcctgataaggag---gtatttcttatgcagtgctgctgggccacataccatagtta |
5620659 |
T |
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Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 36 - 195
Target Start/End: Complemental strand, 21425095 - 21424942
Alignment:
| Q |
36 |
tgaagtatattctcttgacaaatttctgtaatgagctcaattcatcatttaagtgaaacattaggattacagtctggactctggacagataaatgacatg |
135 |
Q |
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| T |
21425095 |
tgaagtatattctcttgacaagtttttgtaatgatcttaattgat-acataaatgatacattaggattacagtttgcactctagacagataaatgacatg |
21424997 |
T |
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| Q |
136 |
atcagctcatagtttttgtaagttaaacagcaggttattctgaaaaaacagcaaattatc |
195 |
Q |
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| T |
21424996 |
ataagctcataatatatgtaagttaaacag-----tattgtgaaaaaacagccaattatc |
21424942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 226 - 264
Target Start/End: Complemental strand, 21424914 - 21424876
Alignment:
| Q |
226 |
atttcttatgcagtgctgctgggccacataccatagtta |
264 |
Q |
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| T |
21424914 |
atttcttatgcagtgctgctggccctcataccatagtta |
21424876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 36 - 195
Target Start/End: Complemental strand, 30636293 - 30636142
Alignment:
| Q |
36 |
tgaagtatattctcttgacaaatttctgtaatgagctcaattcatcatttaagtgaaacattaggattacagtctggactctggacagataaatgacatg |
135 |
Q |
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| T |
30636293 |
tgaagtatattctcttgacaagtttttgtaatgatcttaattgat-acataaatgagacattaggattacagtttgcactctagacagataaatgacatg |
30636195 |
T |
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| Q |
136 |
atcagctcatagtttttgtaagttaaacagcaggttattctgaaaaaacagcaaattatc |
195 |
Q |
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|| |||||||| | |||||||||||||| |||| |||||||||||| ||||||| |
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| T |
30636194 |
ataagctcata--atatgtaagttaaacag-----tattgtgaaaaaacagccaattatc |
30636142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 264
Target Start/End: Complemental strand, 30636114 - 30636076
Alignment:
| Q |
226 |
atttcttatgcagtgctgctgggccacataccatagtta |
264 |
Q |
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| T |
30636114 |
atttcttatgcagtgctgctggcccacataccatagtta |
30636076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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