View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2606_high_4 (Length: 598)
Name: NF2606_high_4
Description: NF2606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2606_high_4 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 382; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 158 - 598
Target Start/End: Original strand, 6970858 - 6971292
Alignment:
| Q |
158 |
tatttatctcttttgtcttttcttcctcgaatctggatttggtacaatgaaatcactgtattgtcaatgtatatagtagatcatagttgtttgatcaaag |
257 |
Q |
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| T |
6970858 |
tatttatttcttttgtcttttcttcctcgaatctggatttggtacaacgaaatcactgtattgtcaatgtatatagtagatcatagttgtttgatcaaag |
6970957 |
T |
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| Q |
258 |
atcaagcaatatgtattatgattatactgaattatatattatattaaataaaactcaagatgcatattgtttgatccgacctaacgaccattattttcta |
357 |
Q |
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| T |
6970958 |
atcaagcaatatgtattatgattatactaaattatatattatattaaataaaactcaagatgcatattgtttgatccgatctaacgaccattattttcta |
6971057 |
T |
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| Q |
358 |
tctacattgactttgctccgtgctttgaccatgtacccaattcaaacccttcttccttgtctttatatcactatttatctcaattttctatctcccctaa |
457 |
Q |
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| T |
6971058 |
tctacattgactttgctccgtgctttgaccatgtacccaattcaaacc------ccttctcttcatatcactatttttctcaattttctatctcctctaa |
6971151 |
T |
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| Q |
458 |
cccttattttttcttgagagaatgtaatttggatcacaattgctgtcacatcactcttgaaacaaattggaacatttgttggcgctgctcccataaaata |
557 |
Q |
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| T |
6971152 |
cccttattttttcttgagagaatgtaatctggatcacaattgctgtcacatcactcttgaaacaaattggaacatttgttggcgctgctcccataaaata |
6971251 |
T |
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| Q |
558 |
aaatggagaggcaaggaagagagaagaatcaagggagactt |
598 |
Q |
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| T |
6971252 |
aaatggagaggcaaggaagagagaagaatcaagggagactt |
6971292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 13 - 141
Target Start/End: Original strand, 6970761 - 6970889
Alignment:
| Q |
13 |
attcttgaaattagcaaaaattaaggttaaatgcacttgatgtgattgtaatgagtctgtattctttatttctactatcctatttattacgaccatctat |
112 |
Q |
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| T |
6970761 |
attcttgaaattagcaaaaattaaggttaaatgcacttgatgtgattggaataagtcagtattctttatttctactatcccatttattacgaccatctat |
6970860 |
T |
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| Q |
113 |
ttatctcttttgtcttttctgccttgaat |
141 |
Q |
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| T |
6970861 |
ttatttcttttgtcttttcttcctcgaat |
6970889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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