View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2606_high_5 (Length: 549)

Name: NF2606_high_5
Description: NF2606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2606_high_5
NF2606_high_5
[»] chr5 (3 HSPs)
chr5 (40-533)||(41346097-41346590)
chr5 (150-215)||(1886061-1886126)
chr5 (157-216)||(37473582-37473641)
[»] chr2 (1 HSPs)
chr2 (168-218)||(13218761-13218811)
[»] chr1 (1 HSPs)
chr1 (169-216)||(30038131-30038178)
[»] chr8 (3 HSPs)
chr8 (157-218)||(5176618-5176678)
chr8 (149-214)||(20998672-20998737)
chr8 (149-214)||(21012626-21012691)
[»] chr3 (4 HSPs)
chr3 (169-218)||(48146894-48146943)
chr3 (169-218)||(8638948-8638997)
chr3 (175-203)||(8728639-8728667)
chr3 (175-203)||(9080526-9080554)
[»] chr4 (2 HSPs)
chr4 (175-224)||(15739271-15739319)
chr4 (147-203)||(22072492-22072548)


Alignment Details
Target: chr5 (Bit Score: 449; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 40 - 533
Target Start/End: Original strand, 41346097 - 41346590
Alignment:
Q  40 attgttagacctcttattagtagttatattatgttattaggctgctgatattgtgtgattaggcagcaggtatgtattagtcagttattgaaagcccaaa 139  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41346097 attgttagacctcttattagtagttatattatgttattaggctgcagatattgtgtgattaggcagcaggtatgtattagtcagttattgaaagcccaaa 41346196  T
Q  140 agtcagggacattttagtttgggacagtatattgattgggagagaccaaactctcgaattcttgaaagggagagacccacaactcgagttttttggggac 239  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41346197 agtcagggacattttagtttgggacagaatattgattgggagagaccaaactctcgaattcttgaaagggagagacccacaactcgagttttttggggac 41346296  T
Q  240 tcgttctaattatatgtatttaggtttttctcattgtctgtttctagcagccaattaatgtacttgtggtgctatggaatcttataattgcnnnnnnnac 339  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||       ||    
T  41346297 tcgttctaattatacgtatttaggtttttctcattgtctgtttctagcagccaattaatgtacttgtggtgctatggaatcttatcattgctttttttac 41346396  T
Q  340 ttgtaattgtagtttcgtagaaattcaatggagaaaaaatatccggagttgtctgaagagattcttttggatgagaaatggttaccacttcttgattact 439  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41346397 ttgtaattgtagtttcgtagaaattcgatggagaaaaaatatccggagttgtctgaagagattcttttggatgagaaatggttaccacttcttgattact 41346496  T
Q  440 taagcacctttggaattaaggaatcacagttcatccaaatttatgagaggcacatgtcatcatttcaaattaatgtatgttctgcacaggaaag 533  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  41346497 taagcacctttggaattaaggaatcacagttcatccaaatttatgagaggcacatgtcgtcatttcaaattaatgtatgttctgcacaggaaag 41346590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 150 - 215
Target Start/End: Original strand, 1886061 - 1886126
Alignment:
Q  150 attttagtttgggacagtatattgattgggagagaccaaactctcgaattcttgaaagggagagac 215  Q
    |||||| |||||||| | |||||||||||||||||||||||||| ||||||||  |||||||||||    
T  1886061 attttattttgggaccggatattgattgggagagaccaaactcttgaattcttagaagggagagac 1886126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 157 - 216
Target Start/End: Original strand, 37473582 - 37473641
Alignment:
Q  157 tttgggacagtatattgattgggagagaccaaactctcgaattcttgaaagggagagacc 216  Q
    |||||||| | ||||||||||||||||||  | |||||||||||||| ||||||||||||    
T  37473582 tttgggactggatattgattgggagagacagagctctcgaattcttggaagggagagacc 37473641  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 168 - 218
Target Start/End: Complemental strand, 13218811 - 13218761
Alignment:
Q  168 atattgattgggagagaccaaactctcgaattcttgaaagggagagaccca 218  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  13218811 atattgattgggagagaccaagctctcgaattcttgcaagggagagaccca 13218761  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 30038178 - 30038131
Alignment:
Q  169 tattgattgggagagaccaaactctcgaattcttgaaagggagagacc 216  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  30038178 tattgattgggagagaccaaactcttgaattcttggaagggagagacc 30038131  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 5176678 - 5176618
Alignment:
Q  157 tttgggacagtatattgattgggagagaccaaactctcgaattcttgaaagggagagaccca 218  Q
    |||||||||| |||||| |||||||||||||| ||||||||||||||  |||||||||||||    
T  5176678 tttgggacaggatattggttgggagagaccaagctctcgaattcttg-gagggagagaccca 5176618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 149 - 214
Target Start/End: Complemental strand, 20998737 - 20998672
Alignment:
Q  149 cattttagtttgggacagtatattgattgggagagaccaaactctcgaattcttgaaagggagaga 214  Q
    ||||||| |||||||| | ||||||||||||||||||| | |||||||||||||  ||||||||||    
T  20998737 cattttattttgggactggatattgattgggagagaccgagctctcgaattcttagaagggagaga 20998672  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 149 - 214
Target Start/End: Original strand, 21012626 - 21012691
Alignment:
Q  149 cattttagtttgggacagtatattgattgggagagaccaaactctcgaattcttgaaagggagaga 214  Q
    ||||||| |||||||| | ||||||||||||||||||| | |||||||||||||  ||||||||||    
T  21012626 cattttattttgggactggatattgattgggagagaccgagctctcgaattcttagaagggagaga 21012691  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 48146894 - 48146943
Alignment:
Q  169 tattgattgggagagaccaaactctcgaattcttgaaagggagagaccca 218  Q
    |||||||||||||||||||| ||||| |||| ||| ||||||||||||||    
T  48146894 tattgattgggagagaccaagctctctaatttttggaagggagagaccca 48146943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 8638948 - 8638997
Alignment:
Q  169 tattgattgggagagaccaaactctcgaattcttgaaagggagagaccca 218  Q
    ||||| |||||||||| ||| ||||| |||||||| ||||||||||||||    
T  8638948 tattggttgggagagaacaagctctctaattcttggaagggagagaccca 8638997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 175 - 203
Target Start/End: Original strand, 8728639 - 8728667
Alignment:
Q  175 ttgggagagaccaaactctcgaattcttg 203  Q
    |||||||||||||||||||||||||||||    
T  8728639 ttgggagagaccaaactctcgaattcttg 8728667  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 175 - 203
Target Start/End: Original strand, 9080526 - 9080554
Alignment:
Q  175 ttgggagagaccaaactctcgaattcttg 203  Q
    |||||||||||||||||||||||||||||    
T  9080526 ttgggagagaccaaactctcgaattcttg 9080554  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 224
Target Start/End: Original strand, 15739271 - 15739319
Alignment:
Q  175 ttgggagagaccaaactctcgaattcttgaaagggagagacccacaactc 224  Q
    |||||||||| ||||||||||||||||||  ||||||||||||| |||||    
T  15739271 ttgggagagatcaaactctcgaattcttg-gagggagagacccaaaactc 15739319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 203
Target Start/End: Original strand, 22072492 - 22072548
Alignment:
Q  147 gacattttagtttgggacagtatattgatt-gggagagaccaaactctcgaattcttg 203  Q
    ||||||||| |||||||| | |||||| || |||||||||||||||||||||||||||    
T  22072492 gacatttta-tttgggactggatattggtttgggagagaccaaactctcgaattcttg 22072548  T

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