View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2606_low_1 (Length: 904)

Name: NF2606_low_1
Description: NF2606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2606_low_1
NF2606_low_1
[»] chr8 (8 HSPs)
chr8 (209-892)||(43254239-43254921)
chr8 (428-512)||(43287973-43288057)
chr8 (235-306)||(43256732-43256803)
chr8 (18-69)||(43255061-43255112)
chr8 (825-892)||(24793312-24793379)
chr8 (727-788)||(24793204-24793264)
chr8 (727-779)||(11394982-11395033)
chr8 (114-146)||(43254984-43255016)
[»] chr7 (9 HSPs)
chr7 (728-892)||(31026012-31026176)
chr7 (727-889)||(47106126-47106286)
chr7 (727-836)||(42565301-42565408)
chr7 (727-889)||(13554694-13554854)
chr7 (726-788)||(46993692-46993753)
chr7 (825-892)||(19728047-19728114)
chr7 (726-788)||(19727937-19727998)
chr7 (727-788)||(43022127-43022187)
chr7 (858-888)||(25019833-25019863)
[»] chr2 (8 HSPs)
chr2 (727-892)||(3119429-3119594)
chr2 (727-892)||(11234977-11235143)
chr2 (726-886)||(7213037-7213196)
chr2 (727-889)||(9669522-9669682)
chr2 (726-892)||(32244115-32244289)
chr2 (726-892)||(37139155-37139329)
chr2 (726-805)||(38443968-38444046)
chr2 (730-802)||(6267342-6267413)
[»] chr6 (5 HSPs)
chr6 (726-892)||(6284175-6284341)
chr6 (727-888)||(13085001-13085162)
chr6 (726-838)||(7015129-7015240)
chr6 (726-788)||(1373263-1373324)
chr6 (726-788)||(1381011-1381072)
[»] chr4 (7 HSPs)
chr4 (726-892)||(37615031-37615196)
chr4 (727-892)||(10353413-10353575)
chr4 (726-892)||(10426386-10426553)
chr4 (726-892)||(9993351-9993525)
chr4 (726-788)||(955220-955281)
chr4 (727-788)||(42954119-42954179)
chr4 (825-889)||(42954009-42954073)
[»] chr3 (9 HSPs)
chr3 (727-892)||(20198608-20198773)
chr3 (727-892)||(53946413-53946579)
chr3 (735-892)||(27497232-27497389)
chr3 (726-892)||(10867162-10867327)
chr3 (727-892)||(27968701-27968866)
chr3 (727-791)||(24888576-24888639)
chr3 (727-788)||(14868414-14868474)
chr3 (825-892)||(14868298-14868365)
chr3 (845-887)||(54440631-54440673)
[»] chr1 (7 HSPs)
chr1 (727-889)||(20795132-20795292)
chr1 (727-889)||(39429742-39429902)
chr1 (726-889)||(49265480-49265641)
chr1 (726-788)||(6892883-6892944)
chr1 (825-892)||(6890921-6890988)
chr1 (825-892)||(6892767-6892834)
chr1 (858-888)||(11867027-11867057)
[»] chr5 (8 HSPs)
chr5 (727-861)||(15005647-15005779)
chr5 (727-850)||(13916155-13916276)
chr5 (726-892)||(3199640-3199815)
chr5 (825-892)||(19513978-19514045)
chr5 (727-788)||(8571384-8571444)
chr5 (727-788)||(19514093-19514153)
chr5 (727-802)||(4399330-4399404)
chr5 (825-892)||(4399437-4399504)


Alignment Details
Target: chr8 (Bit Score: 616; Significance: 0; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 616; E-Value: 0
Query Start/End: Original strand, 209 - 892
Target Start/End: Complemental strand, 43254921 - 43254239
Alignment:
Q  209 accaaaaattatgaaaaatatactttgaaagtacaacagggtcgttgaagttccccaatatagcggttacttttttgtttgtcatttccacaatacccca 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  43254921 accaaaaattatgaaaaatatactttgaaagtacaacagggtcgttgaagttccccaatatagcggttacttttttgtttgtcatttccacaatacccct 43254822  T
Q  309 taagagtgtccgtcacacaacgaggcaaacaagagtggcaaatgaagtcaacaagggcaaatttgatattttgaatgaagattgcatcagtgctgaccca 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43254821 taagagtgtccgtcacacaacgaggcaaacaagagtggcaaatgaagtcaacaagggcaaatttgatattttgaatgaagattgcatcagtgctgaccca 43254722  T
Q  409 cgaacgatgggcctaatttccaaagattaggcaatctcttcaaagttttaacatgcaaatgcaagttatcgactaaacatttattatgacactctataat 508  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43254721 cgaacgatgggcctaatttccaaagattaggcaaactcttcaaagttttaacatgcaaatgcaagttatcgactaaacatttattatgacactctataat 43254622  T
Q  509 tgactaaaatgtacatgtttatgtcatgtttggctgtgtgtaaattgatcaagttttaataaccaaaggtatcctctcctcttaaggtatcattcgtgcg 608  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  43254621 tgactaaaatgtacatgtttatgtcatgtttggctgtgtgtgaattgatcaagttttaataaccaaaggtatcctctcctcttaaggtatcatccgtgcg 43254522  T
Q  609 taactacatagattaatcctaaagttaaatgaaattcatttaagtagttgatcaaattttaaataacctaacctcatgcattgaaactttttacaccgcc 708  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  43254521 taactgcatagattaatcctaaagttaaatgaaattcatttaagtagttgatcaaattttaaataacctaacctcatgcattgaaactttttacaccacc 43254422  T
Q  709 aataaattannnnnnnngaacaagccaaaatgaaattatattaccaaaaacaattagcaatctcttagcaaaaggtgtgcttaaaagactactaccatta 808  Q
    ||||||||         |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||    
T  43254421 aataaatttttttttttgaacaagccaaaatgaaattatattaccaaaaacaa-tagcaatctcttagcaaaaggtgtgcttaaaagactactaccaata 43254323  T
Q  809 tacaaggaaacaaaaacaagaggaaaaaccctccggtggttagacaatgcccaaacaagtcaaaggacttgaccaccacatctg 892  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  43254322 tacaaggaaacaaaaacaagaggaaaaaccctccggtggttagccaatgcccaaacaagtcaaaggacttgaccaccacatctg 43254239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 428 - 512
Target Start/End: Original strand, 43287973 - 43288057
Alignment:
Q  428 ccaaagattaggcaatctcttcaaagttttaacatgcaaatgcaagttatcgactaaacatttattatgacactctataattgac 512  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  43287973 ccaaagattaggcatactcttcaaagttttaacatgcaaatgcaagttatcgactaaacatttattatcacactccataattgac 43288057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 235 - 306
Target Start/End: Complemental strand, 43256803 - 43256732
Alignment:
Q  235 gaaagtacaacagggtcgttgaagttccccaatatagcggttacttttttgtttgtcatttccacaataccc 306  Q
    |||||||||| |||||||||||||||||| || ||||||||||||||||||||| |||| ||||||||||||    
T  43256803 gaaagtacaagagggtcgttgaagttcccaaaaatagcggttacttttttgtttttcatctccacaataccc 43256732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 43255112 - 43255061
Alignment:
Q  18 cattgatagtcctaaatatgatgttcgactacacttacttaactgtcataac 69  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  43255112 cattgatagtcctaaatatgatgttcgactacacttacttaactatcataac 43255061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 825 - 892
Target Start/End: Original strand, 24793312 - 24793379
Alignment:
Q  825 caagaggaaaaaccctccggtggttagacaatgcccaaacaagtcaaaggacttgaccaccacatctg 892  Q
    |||||||||| | ||||||||| |||| ||| ||||||||||  || |||||||||||||||||||||    
T  24793312 caagaggaaacaacctccggtgattagccaaagcccaaacaaaccataggacttgaccaccacatctg 24793379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 727 - 788
Target Start/End: Original strand, 24793204 - 24793264
Alignment:
Q  727 aacaagccaaaatgaaattatattaccaaaaacaattagcaatctcttagcaaaaggtgtgc 788  Q
    |||||||||||||||||||||||||||| || | | || ||||||||||||| |||||||||    
T  24793204 aacaagccaaaatgaaattatattaccataagcga-tatcaatctcttagcacaaggtgtgc 24793264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 727 - 779
Target Start/End: Complemental strand, 11395033 - 11394982
Alignment:
Q  727 aacaagccaaaatgaaattatattaccaaaaacaattagcaatctcttagcaa 779  Q
    |||||||||||||||||||||||||| |||| | | |||||||||||||||||    
T  11395033 aacaagccaaaatgaaattatattactaaaagcga-tagcaatctcttagcaa 11394982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 146
Target Start/End: Complemental strand, 43255016 - 43254984
Alignment:
Q  114 aggaaggactggattcttagcgagcaagtttac 146  Q
    |||||||||||||||||||||||||||||||||    
T  43255016 aggaaggactggattcttagcgagcaagtttac 43254984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 126; Significance: 2e-64; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 728 - 892
Target Start/End: Complemental strand, 31026176 - 31026012
Alignment:
Q  728 acaagccaaaatgaaattatattaccaaaaacaattagcaatctcttagcaaaaggtgtgcttaaaagactactaccattatacaaggaaacaaaaacaa 827  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||    
T  31026176 acaagccaaaatgaaattatattatcaaaaacaat-agcaatctcttagcacaaggtgtgcttaaaagactactaccaatatacaaggaaacaaaatcaa 31026078  T
Q  828 gaggaaaa-accctccggtggttagacaatgcccaaacaagtcaaaggacttgaccaccacatctg 892  Q
    |||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  31026077 gaggaaaacaccctccggtggttagccaatgcccaaacaagccaaaggacttgaccaccacatctg 31026012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 727 - 889
Target Start/End: Complemental strand, 47106286 - 47106126
Alignment:
Q  727 aacaagccaaaatgaaattatattaccaaaaacaattagcaatctcttagcaaaaggtgtgcttaaaagactactaccattatacaaggaaacaaaaaca 826  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||| ||||||| |  || ||||||    
T  47106286 aacaagccaaaatgaaattatattaccaaaaacaat-agcaatctcttagcacaaggtgtgcataaaagactactaccaatatacaatg-gactaaaaca 47106189  T
Q  827 agaggaaaaaccctccggtggttagacaatgcccaaacaagtcaaaggacttgaccaccacat 889  Q
    |||||||||| || |||||| |||  |||||||||||||||  ||||||| ||||||||||||    
T  47106188 agaggaaaaatccaccggtgattatccaatgcccaaacaagctaaaggacatgaccaccacat 47106126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 727 - 836
Target Start/End: Original strand, 42565301 - 42565408
Alignment:
Q  727 aacaagccaaaatgaaattatattaccaaaaacaattagcaatctcttagcaaaaggtgtgcttaaaagactactaccattatacaaggaaacaaaaaca 826  Q
    ||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||| |||||||||||||||| ||||||| | ||| ||||||    
T  42565301 aacaagccaaaatgaaattatattaccaaaaacgat-agcaatctcttagcacaaggtgtgcataaaagactactaccaatatacaatg-aactaaaaca 42565398  T
Q  827 agaggaaaaa 836  Q
    ||||||||||    
T  42565399 agaggaaaaa 42565408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 727 - 889
Target Start/End: Complemental strand, 13554854 - 13554694
Alignment:
Q  727 aacaagccaaaatgaaattatattaccaaaaacaattagcaatctcttagcaaaaggtgtgcttaaaagactactaccattatacaaggaaacaaaaaca 826  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||||| | ||||||||| ||||||| |||||||| ||||||| | |||   ||||    
T  13554854 aacaaggcaaaatgaaattatattaccaaaaacaa-tagcaatctcttagtataaggtgtgcataaaagattactaccaatatacaatg-aactctaaca 13554757  T
Q  827 agaggaaaaaccctccggtggttagacaatgcccaaacaagtcaaaggacttgaccaccacat 889  Q
    ||||||||||||| ||  || |||  ||||||||||||||   ||||||| ||||||||||||    
T  13554756 agaggaaaaacccaccattgattaaccaatgcccaaacaaactaaaggacatgaccaccacat 13554694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 726 - 788
Target Start/End: Original strand, 46993692 - 46993753
Alignment:
Q  726 gaacaagccaaaatgaaattatattaccaaaaacaattagcaatctcttagcaaaaggtgtgc 788  Q
    |||||||||||||||||||||||||||||||| | | |||||||||||| ||| |||||||||    
T  46993692 gaacaagccaaaatgaaattatattaccaaaagcga-tagcaatctcttcgcacaaggtgtgc 46993753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 825 - 892
Target Start/End: Original strand, 19728047 - 19728114
Alignment:
Q  825 caagaggaaaaaccctccggtggttagacaatgcccaaacaagtcaaaggacttgaccaccacatctg 892  Q
    |||||||||| | ||||||||| |||| ||| ||||||||||  || |||||||||||||||||||||    
T  19728047 caagaggaaacaacctccggtgattagccaaagcccaaacaaaccataggacttgaccaccacatctg 19728114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 726 - 788
Target Start/End: Original strand, 19727937 - 19727998
Alignment:
Q  726 gaacaagccaaaatgaaattatattaccaaaaacaattagcaatctcttagcaaaaggtgtgc 788  Q
    ||||||||||||||||||||||||||||||||   | |||||||||||| ||| |||||||||    
T  19727937 gaacaagccaaaatgaaattatattaccaaaagtga-tagcaatctcttcgcacaaggtgtgc 19727998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 727 - 788
Target Start/End: Complemental strand, 43022187 - 43022127
Alignment:
Q  727 aacaagccaaaatgaaattatattaccaaaaacaattagcaatctcttagcaaaaggtgtgc 788  Q
    ||||| ||||||| |||||||||||||| |||| || ||||||||||||||| |||||||||    
T  43022187 aacaaaccaaaataaaattatattaccataaacgat-agcaatctcttagcataaggtgtgc 43022127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 858 - 888
Target Start/End: Complemental strand, 25019863 - 25019833
Alignment:
Q  858 cccaaacaagtcaaaggacttgaccaccaca 888  Q
    |||||||||||||||||||||||||||||||    
T  25019863 cccaaacaagtcaaaggacttgaccaccaca 25019833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 123; Significance: 1e-62; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 727 - 892
Target Start/End: Original strand, 3119429 - 3119594
Alignment:
Q  727 aacaagccaaaatgaaattatattaccaaaaacaattagcaatctcttagcaaaaggtgtgcttaaaagactactaccattatacaaggaaacaaaaaca 826  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||| ||    
T  3119429 aacaagccaaaatgaaattatattaccaaaaacaat-agcaatctcttagcacaaagtgtgcttaaaagactactaccaatatacaaggaaacaaaatca 3119527  T
Q  827 agaggaaaa-accctccggtggttagacaatgcccaaacaagtcaaaggacttgaccaccacatctg 892  Q
    ||||||||| |||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||    
T  3119528 agaggaaaacaccctccggtggttagccaatgcccaaacaagccaaatgacttgaccaccacatctg 3119594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 727 - 892
Target Start/End: Complemental strand, 11235143 - 11234977
Alignment:
Q  727 aacaagccaaaatgaaattatattaccaaaaacaattagcaatctcttagcaaaaggtgtgcttaaaagactactaccattatacaaggaaacaaaaaca 826  Q
    |||||| ||||||||||||||||||||||||||||| || |||||||| ||| ||||||||||||||||||||||||||  | |||||||||||| | ||    
T  11235143 aacaaggcaaaatgaaattatattaccaaaaacaat-agtaatctcttcgcacaaggtgtgcttaaaagactactaccaacacacaaggaaacaatatca 11235045  T
Q  827 agaggaaaaac--cctccggtggttagacaatgcccaaacaagtcaaaggacttgaccaccacatctg 892  Q
    |||| ||||||  |||||||||||||| ||||||||||||||  ||||||||||||||||||||||||    
T  11235044 agagaaaaaacaccctccggtggttagccaatgcccaaacaaaccaaaggacttgaccaccacatctg 11234977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 726 - 886
Target Start/End: Complemental strand, 7213196 - 7213037
Alignment:
Q  726 gaacaagccaaaatgaaattatattaccaaaaacaattagcaatctcttagcaaaaggtgtgcttaaaagactactaccattatacaaggaaacaaaaac 825  Q
    ||||||| |||||||||||||||||| |||||| ||| ||||||||||||| | ||| ||||||||||||||||||| || ||||||||||||||||  |    
T  7213196 gaacaagtcaaaatgaaattatattatcaaaaataat-agcaatctcttagtacaagatgtgcttaaaagactactatcaatatacaaggaaacaaagtc 7213098  T
Q  826 aagaggaaaa-accctccggtggttagacaatgcccaaacaagtcaaaggacttgaccacca 886  Q
    |||||||||| | | | |||| ||||| ||||||||||||||| |||| |||||||||||||    
T  7213097 aagaggaaaacaactttcggtagttagccaatgcccaaacaagccaaa-gacttgaccacca 7213037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 727 - 889
Target Start/End: Complemental strand, 9669682 - 9669522
Alignment:
Q  727 aacaagccaaaatgaaattatattaccaaaaacaattagcaatctcttagcaaaaggtgtgcttaaaagactactaccattatacaaggaaacaaaaaca 826  Q
    ||||||||||||||||||||||||||||||||||| || |||| |||||||| || |||||| ||||||||||||||||   ||||| | ||| | ||||    
T  9669682 aacaagccaaaatgaaattatattaccaaaaacaa-taacaatttcttagcacaaagtgtgcataaaagactactaccaaagtacaacg-aactataaca 9669585  T
Q  827 agaggaaaaaccctccggtggttagacaatgcccaaacaagtcaaaggacttgaccaccacat 889  Q
    ||||||||||||| |||||| |||  ||||||||||||||   ||||||| ||||||||||||    
T  9669584 agaggaaaaacccaccggtgattaaccaatgcccaaacaaactaaaggacatgaccaccacat 9669522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 726 - 892
Target Start/End: Complemental strand, 32244289 - 32244115
Alignment:
Q  726 gaacaagccaaaatgaaattatattaccaaaaacaattagcaatctcttagcaaaaggtgtgcttaaaagactactaccattatacaagga--------- 816  Q
    |||||||||||||| |||||||||||||||||   || ||||||||||||||| ||||||||| |||||||| ||||||| ||||||||||             
T  32244289 gaacaagccaaaataaaattatattaccaaaagtgat-agcaatctcttagcacaaggtgtgcctaaaagaccactaccaatatacaaggaaaacaatgt 32244191  T
Q  817 aacaaaaacaagaggaaaaaccctccggtggttagacaatgcccaaacaagtcaaaggacttgaccaccacatctg 892  Q
    |||||   |||||||||| | ||||  ||| |||| ||||||||| ||||| || |||||||||||||||||||||    
T  32244190 aacaatgtcaagaggaaacaacctcgagtgattagccaatgcccagacaagccataggacttgaccaccacatctg 32244115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 726 - 892
Target Start/End: Original strand, 37139155 - 37139329
Alignment:
Q  726 gaacaagccaaaatgaaattatattaccaaaaacaattagcaatctcttagcaaaaggtgtgcttaaaagactactaccattatacaagga--------- 816  Q
    |||||||| ||||||||||||||||| ||||  | || ||||||||||||||| ||||||||| |||||||| ||||||| || |||| ||             
T  37139155 gaacaagctaaaatgaaattatattaacaaaggcgat-agcaatctcttagcacaaggtgtgcctaaaagaccactaccaataaacaaagagaacaaagt 37139253  T
Q  817 aacaaaaacaagaggaaaaaccctccggtggttagacaatgcccaaacaagtcaaaggacttgaccaccacatctg 892  Q
    ||||||| |||||||||| | ||||||||| |||| ||||||||| ||||  || |||||||||||||||||||||    
T  37139254 aacaaaatcaagaggaaacatcctccggtgattagtcaatgcccagacaaaccataggacttgaccaccacatctg 37139329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 726 - 805
Target Start/End: Complemental strand, 38444046 - 38443968
Alignment:
Q  726 gaacaagccaaaatgaaattatattaccaaaaacaattagcaatctcttagcaaaaggtgtgcttaaaagactactacca 805  Q
    |||||||  ||||||||||||||||||||||  | || | ||||||||||||| ||||||||| |||||||| |||||||    
T  38444046 gaacaagttaaaatgaaattatattaccaaatgcgataa-caatctcttagcataaggtgtgcctaaaagaccactacca 38443968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 730 - 802
Target Start/End: Original strand, 6267342 - 6267413
Alignment:
Q  730 aagccaaaatgaaattatattaccaaaaacaattagcaatctcttagcaaaaggtgtgcttaaaagactacta 802  Q
    |||| ||||||||||||||||||||||  | | ||||||| |||||||| ||||||||| |||||||| ||||    
T  6267342 aagctaaaatgaaattatattaccaaaggcga-tagcaatttcttagcataaggtgtgcctaaaagaccacta 6267413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 112; Significance: 4e-56; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 726 - 892
Target Start/End: Original strand, 6284175 - 6284341
Alignment:
Q  726 gaacaagccaaaatgaaattatattaccaaaaacaattagcaatctcttagcaaaaggtgtgcttaaaagactactaccattatacaaggaaacaaaaac 825  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||  |||||||||||||| | |    
T  6284175 gaacaagtcaaaatgaaattatattaccaaaaacaat-agcaatctcttagcacaaggtgtgcttaaaagactactaccaacatacaaggaaacaatatc 6284273  T
Q  826 aagaggaaaa-accctccggtggttagacaatgcccaaacaagtcaaaggacttgaccaccacatctg 892  Q
    |||||||||| |||||||||||||||| ||||||||||||||  |||| |||||||||||||||||||    
T  6284274 aagaggaaaacaccctccggtggttagtcaatgcccaaacaaaccaaaagacttgaccaccacatctg 6284341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 103; E-Value: 9e-51
Query Start/End: Original strand, 727 - 888
Target Start/End: Original strand, 13085001 - 13085162
Alignment:
Q  727 aacaagccaaaatgaaattatattaccaaaaacaattagcaatctcttagcaaaaggtgtgcttaaaagactactaccattatacaaggaaacaaaaaca 826  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||  |||||||||| ||| ||||    
T  13085001 aacaagccaaaatgaaattatattaccaaaaacaat-agcaatctcttagcacaaggtgtgcttaaaagactactaccaacatacaaggaatcaataaca 13085099  T
Q  827 agaggaaaa-accctccggtggttagacaatgcccaaacaagtcaaaggacttgaccaccaca 888  Q
    | ||||||| |||||||||||||||| |||| |||||||||  |||||||||| |||||||||    
T  13085100 acaggaaaacaccctccggtggttagccaattcccaaacaaaccaaaggacttaaccaccaca 13085162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 726 - 838
Target Start/End: Complemental strand, 7015240 - 7015129
Alignment:
Q  726 gaacaagccaaaatgaaattatattaccaaaaacaattagcaatctcttagcaaaaggtgtgcttaaaagactactaccattatacaaggaaacaaaaac 825  Q
    |||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||  |||||| ||||||| | |    
T  7015240 gaacaaaccaaaatgaaattatattaccaaaaacaat-agcaatctcttagcacaagatgtgcttaaaagactactaccaacatacaaagaaacaatatc 7015142  T
Q  826 aagaggaaaaacc 838  Q
    ||||| |||||||    
T  7015141 aagagaaaaaacc 7015129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 726 - 788
Target Start/End: Complemental strand, 1373324 - 1373263
Alignment:
Q  726 gaacaagccaaaatgaaattatattaccaaaaacaattagcaatctcttagcaaaaggtgtgc 788  Q
    ||||||||||||||||||||||||||||| || | | |||||||||||||||| |||||||||    
T  1373324 gaacaagccaaaatgaaattatattaccataagcga-tagcaatctcttagcacaaggtgtgc 1373263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 726 - 788
Target Start/End: Complemental strand, 1381072 - 1381011
Alignment:
Q  726 gaacaagccaaaatgaaattatattaccaaaaacaattagcaatctcttagcaaaaggtgtgc 788  Q
    ||||||||||||||||||||||||||||| || | | |||||||||||||||| |||||||||    
T  1381072 gaacaagccaaaatgaaattatattaccataagcga-tagcaatctcttagcacaaggtgtgc 1381011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 107; Significance: 4e-53; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 726 - 892
Target Start/End: Original strand, 37615031 - 37615196
Alignment:
Q  726 gaacaagccaaaatgaaattatattaccaaaaacaattagcaatctcttagcaaaaggtgtgcttaaaagactactaccattatacaaggaaacaaaaac 825  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||| ||||| |||||||| |||||||  |    
T  37615031 gaacaagccaaaatgaaattatattaccaaaaacaat-agcaatctcttagcacaaggtgtgcctaaaagactaataccaatatacaagaaaacaaagtc 37615129  T
Q  826 aagaggaaaaaccctccggtggttagacaatgcccaaacaagtcaaaggacttgaccaccacatctg 892  Q
    ||||||||| | |||||||||||||| ||||||||| ||||  ||||||||||||||||||||||||    
T  37615130 aagaggaaacaacctccggtggttagccaatgcccagacaaaccaaaggacttgaccaccacatctg 37615196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 727 - 892
Target Start/End: Original strand, 10353413 - 10353575
Alignment:
Q  727 aacaagccaaaatgaaattatattaccaaaaacaattagcaatctcttagcaaaaggtgtgcttaaaagactactaccattatacaaggaaacaaaaaca 826  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||   |||||||||||  ||||||||||| || | ||    
T  10353413 aacaagccaaaatgaaattatattaccaaaaacaat-agcaatctcttagcacaaggtgtgctta---gactactaccaacatacaaggaaataatatca 10353508  T
Q  827 agaggaaaa-accctccggtggttagacaatgcccaaacaagtcaaaggacttgaccaccacatctg 892  Q
    ||||||||| |||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||    
T  10353509 agaggaaaacaccctccggtggttagccaatgcccaaacaaaccaaaggacttgaccaccacatctg 10353575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 726 - 892
Target Start/End: Complemental strand, 10426553 - 10426386
Alignment:
Q  726 gaacaagccaaaatgaaattatattaccaaaaacaattagcaatctcttagcaaaaggtgtgcttaaaagactactaccattatacaaggaaacaaaaac 825  Q
    ||||||||||||||||||||||||||||||||  |  |||||||||||||||| ||||||||| |||||||| ||||||| ||||||| ||||||| | |    
T  10426553 gaacaagccaaaatgaaattatattaccaaaataa--tagcaatctcttagcataaggtgtgcctaaaagaccactaccaatatacaaagaaacaatatc 10426456  T
Q  826 aagaggaaaaaccctccggtggtta---gacaatgcccaaacaagtcaaaggacttgaccaccacatctg 892  Q
    ||||||||| | ||||| |||||||   | ||| |||||||||||||| |||||||||||||||||||||    
T  10426455 aagaggaaacaacctccagtggttaggcgccaacgcccaaacaagtcataggacttgaccaccacatctg 10426386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 726 - 892
Target Start/End: Complemental strand, 9993525 - 9993351
Alignment:
Q  726 gaacaagccaaaatgaaattatattaccaaaaacaattagcaatctcttagcaaaaggtgtgcttaaaagactactaccattatacaagga--------- 816  Q
    |||||| ||||||||||||||||||||||||| |||| ||||||||||||||| ||| ||||| |||||||| ||||||| ||||||| ||             
T  9993525 gaacaaaccaaaatgaaattatattaccaaaagcaat-agcaatctcttagcacaagatgtgcctaaaagaccactaccaatatacaaagaaaacaatgt 9993427  T
Q  817 aacaaaaacaagaggaaaaaccctccggtggttagacaatgcccaaacaagtcaaaggacttgaccaccacatctg 892  Q
    |||||   |||||||||| | ||||| ||| |||| ||||||||| |||||  | |||||||||||||||||||||    
T  9993426 aacaatgtcaagaggaaacaacctccagtgattagtcaatgcccagacaagctataggacttgaccaccacatctg 9993351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 726 - 788
Target Start/End: Complemental strand, 955281 - 955220
Alignment:
Q  726 gaacaagccaaaatgaaattatattaccaaaaacaattagcaatctcttagcaaaaggtgtgc 788  Q
    |||||||||||||||||||||||||||||||| | | |||||||||||| ||| |||||||||    
T  955281 gaacaagccaaaatgaaattatattaccaaaagcga-tagcaatctcttcgcacaaggtgtgc 955220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 727 - 788
Target Start/End: Complemental strand, 42954179 - 42954119
Alignment:
Q  727 aacaagccaaaatgaaattatattaccaaaaacaattagcaatctcttagcaaaaggtgtgc 788  Q
    |||||||||||||||||||||||||||| |||| | || ||||||||||||| |||||||||    
T  42954179 aacaagccaaaatgaaattatattaccataaacga-taacaatctcttagcacaaggtgtgc 42954119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 825 - 889
Target Start/End: Complemental strand, 42954073 - 42954009
Alignment:
Q  825 caagaggaaaaaccctccggtggttagacaatgcccaaacaagtcaaaggacttgaccaccacat 889  Q
    |||||||||| | ||||||||| |||| ||| ||||||||||  || ||||||||||||||||||    
T  42954073 caagaggaaacaacctccggtgattagccaaagcccaaacaaaccataggacttgaccaccacat 42954009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 107; Significance: 4e-53; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 727 - 892
Target Start/End: Complemental strand, 20198773 - 20198608
Alignment:
Q  727 aacaagccaaaatgaaattatattaccaaaaacaattagcaatctcttagcaaaaggtgtgcttaaaagactactaccattatacaaggaaacaaaaaca 826  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||||||| | ||||||||| |||||||||||||||| |||||||| |||||||||||    
T  20198773 aacaagccaaaatgaaattatattaccaaaaataat-agcaatctcttagaacaaggtgtgcataaaagactactaccaatatacaagaaaacaaaaaca 20198675  T
Q  827 agaggaaaaaccctccggtggtt-agacaatgcccaaacaagtcaaaggacttgaccaccacatctg 892  Q
    | ||||||||||||| ||||||| | |||||||||||||||| |||| |||||||||||||||||||    
T  20198674 aaaggaaaaaccctctggtggttaaaacaatgcccaaacaagccaaaagacttgaccaccacatctg 20198608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 727 - 892
Target Start/End: Complemental strand, 53946579 - 53946413
Alignment:
Q  727 aacaagccaaaatgaaattatattaccaaaaacaattagcaatctcttagcaaaaggtgtgcttaaaagactactaccattatacaaggaaacaaaaaca 826  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||  |||||||||||||| | ||    
T  53946579 aacaaaccaaaatgaaattatattaccaaaaacaat-agcaatctcttagcacaatgtgtgcttaaaagactactaccaacatacaaggaaacaatatca 53946481  T
Q  827 agag--gaaaaaccctccggtggttagacaatgcccaaacaagtcaaaggacttgaccaccacatctg 892  Q
    ||||  |||| |||||||||||||||| ||||||||||||||  ||||||| ||||||||||||||||    
T  53946480 agaggagaaacaccctccggtggttagccaatgcccaaacaaaccaaaggatttgaccaccacatctg 53946413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 735 - 892
Target Start/End: Original strand, 27497232 - 27497389
Alignment:
Q  735 aaaatgaaattatattaccaaaaacaattagcaatctcttagcaaaaggtgtgcttaaaagactactaccattatacaaggaaacaaaaacaagaggaaa 834  Q
    |||| ||||||||||||| ||||||||  ||||||||||||| | ||||||||||||||||||||||| || ||||||||||||||||  |||||| |||    
T  27497232 aaaaagaaattatattacaaaaaacaaa-agcaatctcttagtacaaggtgtgcttaaaagactactatcaatatacaaggaaacaaagtcaagagaaaa 27497330  T
Q  835 a-accctccggtggttagacaatgcccaaacaagtcaaaggacttgaccaccacatctg 892  Q
    | | |||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||    
T  27497331 ataacctccggtggttagccaatgtccaaacaagccaaaggacttgaccaccacatctg 27497389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 726 - 892
Target Start/End: Original strand, 10867162 - 10867327
Alignment:
Q  726 gaacaagccaaaatgaaattatattaccaaaaacaattagcaatctcttagcaaaaggtgtgcttaaaagactactaccattatacaaggaaacaaaaac 825  Q
    |||||||||||||||||||||||||||||||| |||| |||||||||| |||| ||||||||| |||||||||||||||| ||||||| | |||||   |    
T  10867162 gaacaagccaaaatgaaattatattaccaaaa-caat-agcaatctctcagcacaaggtgtgcctaaaagactactaccaatatacaaagtaacaatgtc 10867259  T
Q  826 aagaggaaa-aaccctccggtggttagacaatgcccaaacaagtcaaaggacttgaccaccacatctg 892  Q
    ||||||||| || ||||| ||| |||| ||||||||| ||||| ||   |||||||||||||||||||    
T  10867260 aagaggaaacaaacctccagtgattagccaatgcccagacaagccatgagacttgaccaccacatctg 10867327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 727 - 892
Target Start/End: Original strand, 27968701 - 27968866
Alignment:
Q  727 aacaagccaaaatgaaattatattaccaaaaacaattagcaatctcttagcaaaaggtgtgcttaaaagactactaccattatacaaggaaacaaaaaca 826  Q
    ||||||||||||| ||||||||||||||||| |||| |||||||||  |||| ||||||||| ||| |||| |||| || ||||||| | ||||   |||    
T  27968701 aacaagccaaaataaaattatattaccaaaa-caat-agcaatctcccagcacaaggtgtgcctaagagaccactatcaatatacaaagtaacagtgaca 27968798  T
Q  827 agaggaaa--aaccctccggtggttagacaatgcccaaacaagtcaaaggacttgaccaccacatctg 892  Q
    |||| |||  || || || ||||||||  |||||||| ||||| || |||||||||||||||||||||    
T  27968799 agagaaaacaaaaccaccagtggttagcaaatgcccagacaagccagaggacttgaccaccacatctg 27968866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 727 - 791
Target Start/End: Complemental strand, 24888639 - 24888576
Alignment:
Q  727 aacaagccaaaatgaaattatattaccaaaaacaattagcaatctcttagcaaaaggtgtgctta 791  Q
    |||||| |||||||||||||||||||||||||||| ||||||| |||||| | ||||||||||||    
T  24888639 aacaagtcaaaatgaaattatattaccaaaaacaa-tagcaatttcttagtacaaggtgtgctta 24888576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 727 - 788
Target Start/End: Complemental strand, 14868474 - 14868414
Alignment:
Q  727 aacaagccaaaatgaaattatattaccaaaaacaattagcaatctcttagcaaaaggtgtgc 788  Q
    ||||||||||||||||||||||||||||||| | | |||||||||||| ||| |||||||||    
T  14868474 aacaagccaaaatgaaattatattaccaaaagcga-tagcaatctcttcgcacaaggtgtgc 14868414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 825 - 892
Target Start/End: Complemental strand, 14868365 - 14868298
Alignment:
Q  825 caagaggaaaaaccctccggtggttagacaatgcccaaacaagtcaaaggacttgaccaccacatctg 892  Q
    |||||||||| | ||||||||| |||| ||| ||||||||||  || |||||||||||||||||||||    
T  14868365 caagaggaaacaacctccggtgattagccaaagcccaaacaaaccataggacttgaccaccacatctg 14868298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 845 - 887
Target Start/End: Complemental strand, 54440673 - 54440631
Alignment:
Q  845 tggttagacaatgcccaaacaagtcaaaggacttgaccaccac 887  Q
    ||||||| ||||||||||||||| |||||||||||||||||||    
T  54440673 tggttagccaatgcccaaacaagccaaaggacttgaccaccac 54440631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 91; Significance: 1e-43; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 727 - 889
Target Start/End: Original strand, 20795132 - 20795292
Alignment:
Q  727 aacaagccaaaatgaaattatattaccaaaaacaattagcaatctcttagcaaaaggtgtgcttaaaagactactaccattatacaaggaaacaaaaaca 826  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||  || ||||||||||||| ||||||| ||| | ||||||    
T  20795132 aacaaggcaaaatgaaattatattaccaaaaacaat-agcaatctcttagcacaaggtgtggatagaagactactaccaatatacaatgaa-ctaaaaca 20795229  T
Q  827 agaggaaaaaccctccggtggttagacaatgcccaaacaagtcaaaggacttgaccaccacat 889  Q
    ||||||||||||| ||||||||||  |||||||||||||||  ||||||| ||||||||||||    
T  20795230 agaggaaaaacccaccggtggttatccaatgcccaaacaagctaaaggacatgaccaccacat 20795292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 727 - 889
Target Start/End: Original strand, 39429742 - 39429902
Alignment:
Q  727 aacaagccaaaatgaaattatattaccaaaaacaattagcaatctcttagcaaaaggtgtgcttaaaagactactaccattatacaaggaaacaaaaaca 826  Q
    |||||| |||||||||||||||||||||| |||||| ||||||||||||||| ||||||||| |||||||||||||||| ||||||| |  || ||||||    
T  39429742 aacaagtcaaaatgaaattatattaccaacaacaat-agcaatctcttagcacaaggtgtgcataaaagactactaccaatatacaatg-gactaaaaca 39429839  T
Q  827 agaggaaaaaccctccggtggttagacaatgcccaaacaagtcaaaggacttgaccaccacat 889  Q
    ||||||||||||| |||||| |||  |||||||||||||||  ||||||| || |||||||||    
T  39429840 agaggaaaaacccaccggtgattatccaatgcccaaacaagctaaaggacatggccaccacat 39429902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 726 - 889
Target Start/End: Complemental strand, 49265641 - 49265480
Alignment:
Q  726 gaacaagccaaaatgaaattatattaccaaaaacaattagcaatctcttagcaaaaggtgtgcttaaaagactactaccattatacaaggaaacaaaaac 825  Q
    ||||||| |||||||||||||||||||||| |||||| ||||||||||||| | ||||||||| ||||||||||||| || ||||||| | ||| | |||    
T  49265641 gaacaaggcaaaatgaaattatattaccaacaacaat-agcaatctcttagtacaaggtgtgcataaaagactactatcaatatacaatg-aactataac 49265544  T
Q  826 aagaggaaaaaccctccggtggttagacaatgcccaaacaagtcaaaggacttgaccaccacat 889  Q
    |||||||| || || |||||| |||  ||||||||||||||   ||||||| ||||||||||||    
T  49265543 aagaggaagaatccaccggtgattatccaatgcccaaacaaactaaaggacatgaccaccacat 49265480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 726 - 788
Target Start/End: Complemental strand, 6892944 - 6892883
Alignment:
Q  726 gaacaagccaaaatgaaattatattaccaaaaacaattagcaatctcttagcaaaaggtgtgc 788  Q
    |||||||||||||||||||||||||||||||| | | |||||||||||| ||| |||||||||    
T  6892944 gaacaagccaaaatgaaattatattaccaaaagcga-tagcaatctcttcgcacaaggtgtgc 6892883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 825 - 892
Target Start/End: Complemental strand, 6890988 - 6890921
Alignment:
Q  825 caagaggaaaaaccctccggtggttagacaatgcccaaacaagtcaaaggacttgaccaccacatctg 892  Q
    |||||||||| | ||||||||| |||| ||| ||||||||||  || |||||||||||||||||||||    
T  6890988 caagaggaaacaacctccggtgattagccaaagcccaaacaaaccataggacttgaccaccacatctg 6890921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 825 - 892
Target Start/End: Complemental strand, 6892834 - 6892767
Alignment:
Q  825 caagaggaaaaaccctccggtggttagacaatgcccaaacaagtcaaaggacttgaccaccacatctg 892  Q
    |||||||||| | ||||||||| |||| ||| ||||||||||  || |||||||||||||||||||||    
T  6892834 caagaggaaacaacctccggtgattagccaaagcccaaacaaaccataggacttgaccaccacatctg 6892767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 858 - 888
Target Start/End: Original strand, 11867027 - 11867057
Alignment:
Q  858 cccaaacaagtcaaaggacttgaccaccaca 888  Q
    |||||||||||||||||||||||||||||||    
T  11867027 cccaaacaagtcaaaggacttgaccaccaca 11867057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 8e-39; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 727 - 861
Target Start/End: Original strand, 15005647 - 15005779
Alignment:
Q  727 aacaagccaaaatgaaattatattaccaaaaacaattagcaatctcttagcaaaaggtgtgcttaaaagactactaccattatacaaggaaacaaaaaca 826  Q
    ||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||| ||||||    
T  15005647 aacaagccaaaatgaaattttattaccaaaaacaat-agcaatctcttagcacaaggtgtgcttaaaagactactaccaatatacaaagaaac-aaaaca 15005744  T
Q  827 agaggaaaaaccctccggtggttagacaatgccca 861  Q
    |||||| ||||  |||  |||||||||||||||||    
T  15005745 agaggataaactatccaatggttagacaatgccca 15005779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 727 - 850
Target Start/End: Original strand, 13916155 - 13916276
Alignment:
Q  727 aacaagccaaaatgaaattatattaccaaaaacaattagcaatctcttagcaaaaggtgtgcttaaaagactactaccattatacaaggaaacaaaaaca 826  Q
    ||||||||||||| ||||||||||||||||| |||| ||||||||||||||| ||||||||| |||||||  ||||||| ||||||| |||||||   ||    
T  13916155 aacaagccaaaataaaattatattaccaaaa-caat-agcaatctcttagcacaaggtgtgcctaaaagatcactaccaatatacaaagaaacaatgtca 13916252  T
Q  827 agaggaaaaaccctccggtggtta 850  Q
    | |||||| | ||||| |||||||    
T  13916253 aaaggaaacaacctccagtggtta 13916276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 726 - 892
Target Start/End: Complemental strand, 3199815 - 3199640
Alignment:
Q  726 gaacaagccaaaatgaaattatattaccaaaaacaattagcaatctcttagcaaaaggtgtgcttaaaagactactaccattatacaagga--------- 816  Q
    |||||||||||||| ||||||||||||||||  | || ||||||||||||||| ||||||||| |||||||| |||| ||  | |||| ||             
T  3199815 gaacaagccaaaataaaattatattaccaaaggcgat-agcaatctcttagcacaaggtgtgcctaaaagaccactatcaacaaacaaagagaaacaaag 3199717  T
Q  817 -aacaaaaacaagaggaaaaaccctccggtggttagacaatgcccaaacaagtcaaaggacttgaccaccacatctg 892  Q
     ||||||  |||||||||| | ||||| ||| |||| ||||||||||||||  || |||||||||||||||||||||    
T  3199716 taacaaagtcaagaggaaacaacctccagtgattaggcaatgcccaaacaaaccataggacttgaccaccacatctg 3199640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 825 - 892
Target Start/End: Complemental strand, 19514045 - 19513978
Alignment:
Q  825 caagaggaaaaaccctccggtggttagacaatgcccaaacaagtcaaaggacttgaccaccacatctg 892  Q
    |||||||||| | ||||||||| |||| ||| ||||||||||  || |||||||||||||||||||||    
T  19514045 caagaggaaacaacctccggtgattagccaaagcccaaacaaaccataggacttgaccaccacatctg 19513978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 727 - 788
Target Start/End: Original strand, 8571384 - 8571444
Alignment:
Q  727 aacaagccaaaatgaaattatattaccaaaaacaattagcaatctcttagcaaaaggtgtgc 788  Q
    |||||||||||||||||||||||||||| || | | |||||||||||| ||| |||||||||    
T  8571384 aacaagccaaaatgaaattatattaccataagcga-tagcaatctctttgcataaggtgtgc 8571444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 727 - 788
Target Start/End: Complemental strand, 19514153 - 19514093
Alignment:
Q  727 aacaagccaaaatgaaattatattaccaaaaacaattagcaatctcttagcaaaaggtgtgc 788  Q
    |||||||||||||||||||||||||||| || | | || ||||||||||||| |||||||||    
T  19514153 aacaagccaaaatgaaattatattaccataagcga-taacaatctcttagcacaaggtgtgc 19514093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 727 - 802
Target Start/End: Original strand, 4399330 - 4399404
Alignment:
Q  727 aacaagccaaaatgaaattatattaccaaaaacaattagcaatctcttagcaaaaggtgtgcttaaaagactacta 802  Q
    ||||||| ||||||||||||||||||||||  | | ||||||||||||| || ||||||||  |||||||| ||||    
T  4399330 aacaagctaaaatgaaattatattaccaaacgcga-tagcaatctcttaacataaggtgtgtctaaaagaccacta 4399404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 825 - 892
Target Start/End: Original strand, 4399437 - 4399504
Alignment:
Q  825 caagaggaaaaaccctccggtggttagacaatgcccaaacaagtcaaaggacttgaccaccacatctg 892  Q
    |||||||||| | ||||| ||| ||||  |||||||||||||  || |||||||||||||||||||||    
T  4399437 caagaggaaacaacctccagtgattagctaatgcccaaacaaaccataggacttgaccaccacatctg 4399504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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