View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2606_low_10 (Length: 374)

Name: NF2606_low_10
Description: NF2606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2606_low_10
NF2606_low_10
[»] chr3 (6 HSPs)
chr3 (1-357)||(40840670-40841030)
chr3 (2-65)||(18271986-18272049)
chr3 (3-111)||(1632785-1632892)
chr3 (11-65)||(26442971-26443025)
chr3 (43-110)||(10593524-10593591)
chr3 (11-67)||(1714010-1714066)
[»] chr2 (9 HSPs)
chr2 (2-111)||(37714399-37714508)
chr2 (12-110)||(38320233-38320331)
chr2 (2-65)||(3167918-3167981)
chr2 (11-111)||(13716742-13716842)
chr2 (1-60)||(19945746-19945805)
chr2 (11-68)||(35457419-35457476)
chr2 (11-62)||(14131181-14131232)
chr2 (29-111)||(32976072-32976154)
chr2 (13-65)||(27007191-27007243)
[»] chr6 (5 HSPs)
chr6 (11-111)||(32871785-32871885)
chr6 (11-111)||(6784734-6784834)
chr6 (2-65)||(2130515-2130578)
chr6 (13-111)||(34713477-34713575)
chr6 (11-68)||(28867204-28867261)
[»] chr8 (5 HSPs)
chr8 (3-110)||(38585112-38585219)
chr8 (2-65)||(26415574-26415637)
chr8 (1-61)||(24068139-24068198)
chr8 (2-65)||(33543370-33543432)
chr8 (2-99)||(29414370-29414467)
[»] chr1 (9 HSPs)
chr1 (11-110)||(10061569-10061668)
chr1 (2-111)||(35413002-35413111)
chr1 (2-111)||(21540050-21540159)
chr1 (2-110)||(35149687-35149795)
chr1 (2-68)||(23906629-23906695)
chr1 (3-61)||(43537169-43537227)
chr1 (11-63)||(11470048-11470100)
chr1 (2-99)||(26469932-26470029)
chr1 (2-65)||(29657386-29657449)
[»] chr5 (5 HSPs)
chr5 (11-111)||(25493795-25493895)
chr5 (278-315)||(5891455-5891492)
chr5 (2-38)||(20359962-20359998)
chr5 (2-99)||(3040283-3040380)
chr5 (1-65)||(34280128-34280192)
[»] chr4 (9 HSPs)
chr4 (2-65)||(29065301-29065364)
chr4 (2-67)||(19482538-19482603)
chr4 (2-67)||(42504217-42504282)
chr4 (19-60)||(51304339-51304380)
chr4 (2-65)||(41545437-41545500)
chr4 (11-61)||(5288548-5288598)
chr4 (11-61)||(25817691-25817741)
chr4 (11-64)||(37762830-37762883)
chr4 (11-59)||(24060604-24060652)
[»] chr7 (5 HSPs)
chr7 (2-112)||(20125565-20125675)
chr7 (2-61)||(22631506-22631565)
chr7 (11-61)||(21882801-21882851)
chr7 (31-111)||(23611801-23611881)
chr7 (11-111)||(46297589-46297689)
[»] scaffold0018 (1 HSPs)
scaffold0018 (2-110)||(69948-70056)
[»] scaffold0247 (1 HSPs)
scaffold0247 (14-57)||(19220-19263)


Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 357
Target Start/End: Original strand, 40840670 - 40841030
Alignment:
Q  1 tctttctttgattacacaccattatctcctttgatttctgtcaaataacaaatttaattggttgaaacannnnnnngataaatttttgataaaaactctt 100  Q
    |||||||||||||| ||| ||||| ||||||||||||| | ||||||| |||||||||| |||||||||       ||||||| ||||||||||| |||     
T  40840670 tctttctttgattatacatcattacctcctttgatttccgccaaataataaatttaattagttgaaacatttttttgataaatatttgataaaaattctc 40840769  T
Q  101 taaataaatagaccaatgctcgtgttaaaaatatatcactaagtatatcttaatgatcattgaatgcatgttttattacacat----tgatcatcaaatt 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||    
T  40840770 taaataaatagaccaatgctcgtgttaaaaatatatcactaagtatatcttaatgatcattgaatgcatgttttattacacatagtttgatcatcaaatt 40840869  T
Q  197 attaacacaagatgcattttaagatatttttatattggtaatgttgcttatagcgaaaagtagtatagcgaaaatatcatgacaatgcatttgcataaag 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40840870 attaacacaagatgcattttaagatatttttatattggtaatgttgcttatagcgaaaagtagtatagcgaaaatatcatgacaatgcatttgcataaag 40840969  T
Q  297 catgattgtggaagactattttgcttttaatctaacggtggcacagcacttcgtgaaatgt 357  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  40840970 catgattgtggaagactattttgcttttaatctaacggtggcagagcacttcgtgaaatgt 40841030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 2 - 65
Target Start/End: Original strand, 18271986 - 18272049
Alignment:
Q  2 ctttctttgattacacaccattatctcctttgatttctgtcaaataacaaatttaattggttga 65  Q
    |||||||| |||||||||||||| |||| |||||||| | ||||||||||||||||||||||||    
T  18271986 ctttctttaattacacaccattacctccattgatttccgccaaataacaaatttaattggttga 18272049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 111
Target Start/End: Complemental strand, 1632892 - 1632785
Alignment:
Q  3 tttctttgattacacaccattatctcctttgatttctgtcaaataacaaatttaattggttgaaacannnnnnngataaatttttgataaaaactcttta 102  Q
    ||||||| |||||||||||||| ||||||||||||| |  ||||||||||||||||| ||||| |||       ||| ||||||||||||||| ||| ||    
T  1632892 tttctttaattacacaccattacctcctttgatttccgcaaaataacaaatttaattagttgagacattttcttgat-aatttttgataaaaattctcta 1632794  T
Q  103 aataaatag 111  Q
     ||||||||    
T  1632793 gataaatag 1632785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 26443025 - 26442971
Alignment:
Q  11 attacacaccattatctcctttgatttctgtcaaataacaaatttaattggttga 65  Q
    |||||||||||||| |||| |||||||| | ||||||||||||||||||||||||    
T  26443025 attacacaccattacctcccttgatttccgccaaataacaaatttaattggttga 26442971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 110
Target Start/End: Original strand, 10593524 - 10593591
Alignment:
Q  43 aaataacaaatttaattggttgaaacannnnnnngataaatttttgataaaaactctttaaataaata 110  Q
    ||||||||||||||||||||||| |||       |||||||| ||||||||| |||| ||||||||||    
T  10593524 aaataacaaatttaattggttgagacattttctggataaattcttgataaaatctctctaaataaata 10593591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 1714010 - 1714066
Alignment:
Q  11 attacacaccattatctcctttgatttctgtcaaataacaaatttaattggttgaaa 67  Q
    |||| |||| ||||||||| || ||||| | ||||||||||||||||||| ||||||    
T  1714010 attatacacaattatctcccttaatttccgccaaataacaaatttaattgattgaaa 1714066  T

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Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 2 - 111
Target Start/End: Complemental strand, 37714508 - 37714399
Alignment:
Q  2 ctttctttgattacacaccattatctcctttgatttctgtcaaataacaaatttaattggttgaaacannnnnnngataaatttttgataaaaactcttt 101  Q
    ||||| || ||||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||        |||||||  |||||||||||||| |    
T  37714508 ctttccttaattacacaccattatctcctttgatttccatcaaataacaaatttaattggttgataccttttcttgataaatcattgataaaaactctct 37714409  T
Q  102 aaataaatag 111  Q
    | ||||||||    
T  37714408 agataaatag 37714399  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 110
Target Start/End: Original strand, 38320233 - 38320331
Alignment:
Q  12 ttacacaccattatctcctttgatttctgtcaaataacaaatttaattggttgaaacannnnnnngataaatttttgataaaaactctttaaataaata 110  Q
    ||||||| ||||| |||||||||||||   ||||||||||||||||||||||||||         |||||||| |||||||||||||| || |||||||    
T  38320233 ttacacatcattacctcctttgatttccaccaaataacaaatttaattggttgaaaacttttcttgataaattcttgataaaaactctctagataaata 38320331  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 65
Target Start/End: Complemental strand, 3167981 - 3167918
Alignment:
Q  2 ctttctttgattacacaccattatctcctttgatttctgtcaaataacaaatttaattggttga 65  Q
    |||||||| |||||||| ||||| || |||||||||| | ||||||| ||||||||||||||||    
T  3167981 ctttctttaattacacatcattaccttctttgatttccgacaaataataaatttaattggttga 3167918  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 111
Target Start/End: Original strand, 13716742 - 13716842
Alignment:
Q  11 attacacaccattatctcctttgatttctgtcaaataacaaatttaattggttgaaacannnnnnngataaatttttgataaaaactctttaaataaata 110  Q
    ||||||||| |||| ||||||||||||  | ||||| |||||||||||||||||| ||        |||||||| |||||||||||||| || |||||||    
T  13716742 attacacactattacctcctttgattttcgccaaatcacaaatttaattggttgagactttttcttgataaattcttgataaaaactctctagataaata 13716841  T
Q  111 g 111  Q
    |    
T  13716842 g 13716842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 19945746 - 19945805
Alignment:
Q  1 tctttctttgattacacaccattatctcctttgatttctgtcaaataacaaatttaattg 60  Q
    |||||| || |||||||||||||| |||| || ||||| |||||||||||||||||||||    
T  19945746 tctttccttaattacacaccattacctcccttaatttccgtcaaataacaaatttaattg 19945805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 68
Target Start/End: Complemental strand, 35457476 - 35457419
Alignment:
Q  11 attacacaccattatctcctttgatttctgtcaaataacaaatttaattggttgaaac 68  Q
    |||||||||||||| ||||||||||||| |  |||||| ||||||||||| |||||||    
T  35457476 attacacaccattacctcctttgatttccgctaaataataaatttaattgattgaaac 35457419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 62
Target Start/End: Complemental strand, 14131232 - 14131181
Alignment:
Q  11 attacacaccattatctcctttgatttctgtcaaataacaaatttaattggt 62  Q
    ||||||||||||||||||  |||||||| | ||||||||| |||||||||||    
T  14131232 attacacaccattatctcgcttgatttccgccaaataacagatttaattggt 14131181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 111
Target Start/End: Original strand, 32976072 - 32976154
Alignment:
Q  29 ctttgatttctgtcaaataacaaatttaattggttgaaacannnnnnngataaatttttgataaaaactctttaaataaatag 111  Q
    |||||||||| | |||||||||||||||||||||||| |||       ||| |||| ||||||||| |||| || ||||||||    
T  32976072 ctttgatttccgacaaataacaaatttaattggttgagacattttcttgatcaattcttgataaaatctctctagataaatag 32976154  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 27007243 - 27007191
Alignment:
Q  13 tacacaccattatctcctttgatttctgtcaaataacaaatttaattggttga 65  Q
    ||||||| |||| |||| |||||||| | ||||||||||||||| ||||||||    
T  27007243 tacacactattacctcccttgatttccgccaaataacaaatttatttggttga 27007191  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 111
Target Start/End: Original strand, 32871785 - 32871885
Alignment:
Q  11 attacacaccattatctcctttgatttctgtcaaataacaaatttaattggttgaaacannnnnnngataaatttttgataaaaactctttaaataaata 110  Q
    ||||||||| |||| |||| |||||||| |||||||||||||||||||||||||||||        |||||||| |||||||||||||| || |||||||    
T  32871785 attacacactattacctcccttgatttccgtcaaataacaaatttaattggttgaaaccttttcttgataaattcttgataaaaactctctagataaata 32871884  T
Q  111 g 111  Q
    |    
T  32871885 g 32871885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 111
Target Start/End: Original strand, 6784734 - 6784834
Alignment:
Q  11 attacacaccattatctcctttgatttctgtcaaataacaaatttaattggttgaaacannnnnnngataaatttttgataaaaactctttaaataaata 110  Q
    ||||||||||||||||||| |||||||| | |||||||||||||||||||| ||| |         |||||||| |||||||||||||| || |||||||    
T  6784734 attacacaccattatctcccttgatttccgacaaataacaaatttaattggctgagatcttttattgataaattgttgataaaaactctctagataaata 6784833  T
Q  111 g 111  Q
    |    
T  6784834 g 6784834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 65
Target Start/End: Original strand, 2130515 - 2130578
Alignment:
Q  2 ctttctttgattacacaccattatctcctttgatttctgtcaaataacaaatttaattggttga 65  Q
    ||||| || ||||||||| || | ||||||||||||| | ||||||||||||||||||||||||    
T  2130515 ctttccttaattacacacaatcacctcctttgatttccgccaaataacaaatttaattggttga 2130578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 111
Target Start/End: Complemental strand, 34713575 - 34713477
Alignment:
Q  13 tacacaccattatctcctttgatttctgtcaaataacaaatttaattggttgaaacannnnnnngataaatttttgataaaaactctttaaataaatag 111  Q
    ||||||||||||  ||| |||||||  | |||||||||||||||||| ||||| |||       |||||||| |||||||||||||| | |||||||||    
T  34713575 tacacaccattacatcccttgattttcgccaaataacaaatttaattagttgagacaatttcttgataaattcttgataaaaactctctgaataaatag 34713477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 68
Target Start/End: Complemental strand, 28867261 - 28867204
Alignment:
Q  11 attacacaccattatctcctttgatttctgtcaaataacaaatttaattggttgaaac 68  Q
    |||||| || |||| |||||||||||||   ||||||||||||||||||| |||||||    
T  28867261 attacatactattacctcctttgatttccaacaaataacaaatttaattgattgaaac 28867204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 3 - 110
Target Start/End: Original strand, 38585112 - 38585219
Alignment:
Q  3 tttctttgattacacaccattatctcctttgatttctgtcaaataacaaatttaattggttgaaacannnnnnngataaatttttgataaaaactcttta 102  Q
    ||||||| ||||||||| |||| ||||||||||||| | ||||| ||||||||||||  ||||||||       |||||||| |||||||||||||| ||    
T  38585112 tttctttaattacacacaattacctcctttgatttccgccaaatgacaaatttaattaattgaaacattttcttgataaattcttgataaaaactctcta 38585211  T
Q  103 aataaata 110  Q
    ||||||||    
T  38585212 aataaata 38585219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 65
Target Start/End: Complemental strand, 26415637 - 26415574
Alignment:
Q  2 ctttctttgattacacaccattatctcctttgatttctgtcaaataacaaatttaattggttga 65  Q
    ||||| || |||||||| ||||||||| ||| ||||| ||||||||| ||||||||||||||||    
T  26415637 ctttccttaattacacatcattatctcttttaatttccgtcaaataataaatttaattggttga 26415574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 24068139 - 24068198
Alignment:
Q  1 tctttctttgattacacaccattatctcctttgatttctgtcaaataacaaatttaattgg 61  Q
    |||||| || |||||||||||| | |||||||||||| || ||||||||||||||||||||    
T  24068139 tctttccttaattacacaccatcacctcctttgattt-tggcaaataacaaatttaattgg 24068198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 2 - 65
Target Start/End: Complemental strand, 33543432 - 33543370
Alignment:
Q  2 ctttctttgattacacaccattatctcctttgatttctgtcaaataacaaatttaattggttga 65  Q
    |||| ||| ||||||||| ||||||||| |||||||| | |||||||||||||| |||||||||    
T  33543432 ctttttttaattacacac-attatctcccttgatttcagccaaataacaaattttattggttga 33543370  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 99
Target Start/End: Complemental strand, 29414467 - 29414370
Alignment:
Q  2 ctttctttgattacacaccattatctcctttgatttctgtcaaataacaaatttaattggttgaaacannnnnnngataaatttttgataaaaactct 99  Q
    ||||| || |||| ||||||||| || | |||||||  | |||||||||||||||||||| ||| |||       ||| |||||||||||||||||||    
T  29414467 ctttccttaattaaacaccattaccttccttgattttcggcaaataacaaatttaattggctgagacattttcttgatcaatttttgataaaaactct 29414370  T

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Target: chr1 (Bit Score: 47; Significance: 9e-18; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 11 - 110
Target Start/End: Complemental strand, 10061668 - 10061569
Alignment:
Q  11 attacacaccattatctcctttgatttctgtcaaataacaaatttaattggttgaaacannnnnnngataaatttttgataaaaactctttaaataaata 110  Q
    |||||||| ||||| |||| ||||||||||||||||||||||||||||||||||| ||        |||||||| |||||||||||||| || |||||||    
T  10061668 attacacatcattacctcccttgatttctgtcaaataacaaatttaattggttgagacttttttttgataaattcttgataaaaactctctagataaata 10061569  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 111
Target Start/End: Complemental strand, 35413111 - 35413002
Alignment:
Q  2 ctttctttgattacacaccattatctcctttgatttctgtcaaataacaaatttaattggttgaaacannnnnnngataaatttttgataaaaactcttt 101  Q
    ||||| || ||||||||| |||| |||| |||||||| |||||||||||||||||||||||||| ||        |||||||| |||||||||||||| |    
T  35413111 ctttccttaattacacactattacctcccttgatttccgtcaaataacaaatttaattggttgagaccttttcttgataaattattgataaaaactctct 35413012  T
Q  102 aaataaatag 111  Q
    | ||||||||    
T  35413011 agataaatag 35413002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 2 - 111
Target Start/End: Complemental strand, 21540159 - 21540050
Alignment:
Q  2 ctttctttgattacacaccattatctcctttgatttctgtcaaataacaaatttaattggttgaaacannnnnnngataaatttttgataaaaactcttt 101  Q
    |||||||| |||||||  |||||||||| || ||||| | |||||||||||||||||||| ||| |||       ||||| || |||||||||||||| |    
T  21540159 ctttctttaattacacttcattatctcccttaatttccgccaaataacaaatttaattggctgagacattttcttgataatttcttgataaaaactctct 21540060  T
Q  102 aaataaatag 111  Q
    ||||||||||    
T  21540059 aaataaatag 21540050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 110
Target Start/End: Original strand, 35149687 - 35149795
Alignment:
Q  2 ctttctttgattacacaccattatctcctttgatttctgtcaaataacaaatttaattggttgaaacannnnnnngataaatttttgataaaaactcttt 101  Q
    ||||| || |||| ||| |||||||||| ||||||| ||||||||||||||||||||||||| | | |       |||||||| |||||||||||||| |    
T  35149687 ctttccttaattatacatcattatctcccttgatttatgtcaaataacaaatttaattggttaagatattttcttgataaattcttgataaaaactctct 35149786  T
Q  102 aaataaata 110  Q
    | |||||||    
T  35149787 agataaata 35149795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 2 - 68
Target Start/End: Original strand, 23906629 - 23906695
Alignment:
Q  2 ctttctttgattacacaccattatctcctttgatttctgtcaaataacaaatttaattggttgaaac 68  Q
    |||||||| |||||||||||||| |||  ||||||| || |||||||||||||||||||| ||||||    
T  23906629 ctttctttaattacacaccattacctctcttgatttgtggcaaataacaaatttaattggctgaaac 23906695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 43537169 - 43537227
Alignment:
Q  3 tttctttgattacacaccattatctcctttgatttctgtcaaataacaaatttaattgg 61  Q
    ||||||| |||||||||||||| |||| |||||||| | ||||||||||||||||||||    
T  43537169 tttctttaattacacaccattacctcccttgatttccggcaaataacaaatttaattgg 43537227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 11470100 - 11470048
Alignment:
Q  11 attacacaccattatctcctttgatttctgtcaaataacaaatttaattggtt 63  Q
    |||||||| ||||| |||| |||||||| | ||||||||||||||||||||||    
T  11470100 attacacatcattacctcccttgatttccgccaaataacaaatttaattggtt 11470048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 99
Target Start/End: Complemental strand, 26470029 - 26469932
Alignment:
Q  2 ctttctttgattacacaccattatctcctttgatttctgtcaaataacaaatttaattggttgaaacannnnnnngataaatttttgataaaaactct 99  Q
    ||||| || ||||||||||||||||| |||||||||   | |||||| |||||||||| ||||| |||       |||||||| ||||||||||||||    
T  26470029 ctttccttaattacacaccattatcttctttgattttcattaaataataaatttaatttgttgagacattttcttgataaattcttgataaaaactct 26469932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 2 - 65
Target Start/End: Complemental strand, 29657449 - 29657386
Alignment:
Q  2 ctttctttgattacacaccattatctcctttgatttctgtcaaataacaaatttaattggttga 65  Q
    ||||| || |||||| | ||||| ||||||||||||  | ||||||||||||||||||||||||    
T  29657449 ctttccttaattacatatcattacctcctttgattttcggcaaataacaaatttaattggttga 29657386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 11 - 111
Target Start/End: Complemental strand, 25493895 - 25493795
Alignment:
Q  11 attacacaccattatctcctttgatttctgtcaaataacaaatttaattggttgaaacannnnnnngataaatttttgataaaaactctttaaataaata 110  Q
    |||||||||||||| ||||||||||||||| |||| ||||||||||||||| ||| |||       ||| |||| |||||||||||||| || |||||||    
T  25493895 attacacaccattacctcctttgatttctgacaaagaacaaatttaattggctgagacattttcttgatcaattcttgataaaaactctctagataaata 25493796  T
Q  111 g 111  Q
    |    
T  25493795 g 25493795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 278 - 315
Target Start/End: Original strand, 5891455 - 5891492
Alignment:
Q  278 acaatgcatttgcataaagcatgattgtggaagactat 315  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  5891455 acaatgcatttgcataaagcatgattgtggatgactat 5891492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 20359998 - 20359962
Alignment:
Q  2 ctttctttgattacacaccattatctcctttgatttc 38  Q
    |||||||| ||||||||||||||||||||||||||||    
T  20359998 ctttctttaattacacaccattatctcctttgatttc 20359962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 99
Target Start/End: Original strand, 3040283 - 3040380
Alignment:
Q  2 ctttctttgattacacaccattatctcctttgatttctgtcaaataacaaatttaattggttgaaacannnnnnngataaatttttgataaaaactct 99  Q
    ||||| || |||||||||||||| |||| |||||||    || |||||||||||||||| |||| |||       |||||||| ||||||||||||||    
T  3040283 ctttccttaattacacaccattacctcccttgattttcaccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactct 3040380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 34280128 - 34280192
Alignment:
Q  1 tctttctttgattacacaccattatctcctttgatttctgtcaaataacaaatttaattggttga 65  Q
    |||||| || |||||| |||||||||| | || ||||| | ||||||||||||||||||| ||||    
T  34280128 tctttccttaattacataccattatcttccttaatttccgccaaataacaaatttaattgattga 34280192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 2 - 65
Target Start/End: Original strand, 29065301 - 29065364
Alignment:
Q  2 ctttctttgattacacaccattatctcctttgatttctgtcaaataacaaatttaattggttga 65  Q
    |||||||| |||||||||||||| |||| |||||||| ||||||||||||||||||||| ||||    
T  29065301 ctttctttaattacacaccattacctccattgatttccgtcaaataacaaatttaattgattga 29065364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 19482603 - 19482538
Alignment:
Q  2 ctttctttgattacacaccattatctcctttgatttctgtcaaataacaaatttaattggttgaaa 67  Q
    ||||| || ||||||||||||||  ||| |||||||| | ||||||||||||||||||||||||||    
T  19482603 ctttccttaattacacaccattacttcccttgatttccgccaaataacaaatttaattggttgaaa 19482538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 42504217 - 42504282
Alignment:
Q  2 ctttctttgattacacaccattatctcctttgatttctgtcaaataacaaatttaattggttgaaa 67  Q
    ||||| || |||||||| ||||| |||| |||||||| | ||||||||||||||||||||||||||    
T  42504217 ctttccttaattacacatcattacctcccttgatttccggcaaataacaaatttaattggttgaaa 42504282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 51304339 - 51304380
Alignment:
Q  19 ccattatctcctttgatttctgtcaaataacaaatttaattg 60  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  51304339 ccattatctcctttgatttccgtcaaataacaaatttaattg 51304380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 65
Target Start/End: Complemental strand, 41545500 - 41545437
Alignment:
Q  2 ctttctttgattacacaccattatctcctttgatttctgtcaaataacaaatttaattggttga 65  Q
    ||||| || ||||||||| |||| || ||| |||||||| ||||||||||||||||||||||||    
T  41545500 ctttcattaattacacacaattaccttcttcgatttctgccaaataacaaatttaattggttga 41545437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 61
Target Start/End: Complemental strand, 5288598 - 5288548
Alignment:
Q  11 attacacaccattatctcctttgatttctgtcaaataacaaatttaattgg 61  Q
    ||||||||||||||||||| |||||||  | ||||||||||||||||||||    
T  5288598 attacacaccattatctcccttgatttacggcaaataacaaatttaattgg 5288548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 61
Target Start/End: Complemental strand, 25817741 - 25817691
Alignment:
Q  11 attacacaccattatctcctttgatttctgtcaaataacaaatttaattgg 61  Q
    |||||||||||||| |||  |||||||| ||||||||||||||||||||||    
T  25817741 attacacaccattacctcacttgatttccgtcaaataacaaatttaattgg 25817691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 37762883 - 37762830
Alignment:
Q  11 attacacaccattatctcctttgatttctgtcaaataacaaatttaattggttg 64  Q
    |||||||| |||||| |||||||| ||  |||||||||||||||||||||||||    
T  37762883 attacacatcattatttcctttgactttcgtcaaataacaaatttaattggttg 37762830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 24060652 - 24060604
Alignment:
Q  11 attacacaccattatctcctttgatttctgtcaaataacaaatttaatt 59  Q
    ||||||||||||||||||| |||||||||  | ||||||||||||||||    
T  24060652 attacacaccattatctcccttgatttctaaccaataacaaatttaatt 24060604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 2 - 112
Target Start/End: Complemental strand, 20125675 - 20125565
Alignment:
Q  2 ctttctttgattacacaccattatctcctttgatttctgtcaaataacaaatttaattggttgaaacannnnnnngataaatttttgataaaaactcttt 101  Q
    |||||||| ||||||||||||||||| |||| ||||||| ||| |||||||||||||||| ||| |||       ||| |||| ||||||||| |||| |    
T  20125675 ctttctttaattacacaccattatcttctttaatttctgacaagtaacaaatttaattggctgacacattttcttgatcaattcttgataaaacctctct 20125576  T
Q  102 aaataaataga 112  Q
    | |||||||||    
T  20125575 agataaataga 20125565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 61
Target Start/End: Complemental strand, 22631565 - 22631506
Alignment:
Q  2 ctttctttgattacacaccattatctcctttgatttctgtcaaataacaaatttaattgg 61  Q
    ||||| || ||||||||| |||||||||||||||||| | ||||||||||||||||||||    
T  22631565 ctttccttaattacacactattatctcctttgatttccgacaaataacaaatttaattgg 22631506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 61
Target Start/End: Original strand, 21882801 - 21882851
Alignment:
Q  11 attacacaccattatctcctttgatttctgtcaaataacaaatttaattgg 61  Q
    |||||||||||||| |||| |||||||| | ||||||||||||||||||||    
T  21882801 attacacaccattacctcccttgatttccggcaaataacaaatttaattgg 21882851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 31 - 111
Target Start/End: Original strand, 23611801 - 23611881
Alignment:
Q  31 ttgatttctgtcaaataacaaatttaattggttgaaacannnnnnngataaatttttgataaaaactctttaaataaatag 111  Q
    |||||||| |||||||||||||||||||| ||||| |||       |||||||| || ||||||||||| || ||||||||    
T  23611801 ttgatttccgtcaaataacaaatttaatttgttgagacattttcttgataaattcttaataaaaactctctagataaatag 23611881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 111
Target Start/End: Complemental strand, 46297689 - 46297589
Alignment:
Q  11 attacacaccattatctcctttgatttctgtcaaataacaaatttaattggttgaaacannnnnnngataaatttttgataaaaactctttaaataaata 110  Q
    |||||||||||||| |||| |||||||  | ||||||||||||| || ||| ||| |||       |||||||| |||||||||||||| || |||||||    
T  46297689 attacacaccattaactcccttgattttcgacaaataacaaattaaaatggctgagacattttcttgataaattcttgataaaaactctctagataaata 46297590  T
Q  111 g 111  Q
    |    
T  46297589 g 46297589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 110
Target Start/End: Original strand, 69948 - 70056
Alignment:
Q  2 ctttctttgattacacaccattatctcctttgatttctgtcaaataacaaatttaattggttgaaacannnnnnngataaatttttgataaaaactcttt 101  Q
    ||||| || ||||||| ||||||||||| |||||||| | | |||||||||||||||||| ||||||        ||| |||||| |||||||||||| |    
T  69948 ctttccttaattacaccccattatctcccttgatttccggccaataacaaatttaattggctgaaaccttttcttgatcaattttagataaaaactctct 70047  T
Q  102 aaataaata 110  Q
    | |||||||    
T  70048 agataaata 70056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 57
Target Start/End: Complemental strand, 19263 - 19220
Alignment:
Q  14 acacaccattatctcctttgatttctgtcaaataacaaatttaa 57  Q
    |||||| |||| ||||||||||||| ||||||||||||||||||    
T  19263 acacactattacctcctttgatttccgtcaaataacaaatttaa 19220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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