View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2606_low_11 (Length: 338)
Name: NF2606_low_11
Description: NF2606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2606_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 20170047 - 20170364
Alignment:
| Q |
1 |
atggtgcttgacggagggagtagaatttaataaagcaatttaaagatatttttagtcatgtttgttgcgttaagcaagcaaaccttctcacaatagaata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20170047 |
atggtgcttgacggagggagtagaatttaataaagcaatttaaagatatttttagtcatgtttgttgcgttaagcaagcaaaccttctcacaatagaata |
20170146 |
T |
|
| Q |
101 |
ccatacaatacccacaattaagtcatatacataatcttacaaaacgcaatgttgttgtaaacataattcattattgtagaatatgtttgtctttgtatat |
200 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
20170147 |
ccatacaatacctacaattaagtcatatacataatcttacaaa-cgcaatgttgttgtaaacataa--cattattgtagaatatgtttgtctttgtatat |
20170243 |
T |
|
| Q |
201 |
acacttatcgtataccatataagtcacttagacatgggtcacctgagaaaatttagtcatacataacaaaggtttccttgtaacagcaaagactatttgt |
300 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20170244 |
acacttatcgtataccatacaagtcacttagacatgggtcacctgagaaaatttagtcatacataacaaaggtttccttgtaacagcaaagactatttgt |
20170343 |
T |
|
| Q |
301 |
cgtaacttgtcagtaatatgt |
321 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
20170344 |
cgtaacttgtcagtaatatgt |
20170364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 44391757 - 44392074
Alignment:
| Q |
1 |
atggtgcttgacggagggagtagaatttaataaagcaatttaaagatatttttagtcatgtttgttgcgttaagcaagcaaaccttctcacaatagaata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44391757 |
atggtgcttgacggagggagtagaatttaataaagcaatttaaagatatttttagtcatgtttgttgcgttaagcaagcaaaccttctcacaatagaata |
44391856 |
T |
|
| Q |
101 |
ccatacaatacccacaattaagtcatatacataatcttacaaaacgcaatgttgttgtaaacataattcattattgtagaatatgtttgtctttgtatat |
200 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
44391857 |
ccatacaatacctacaattaagtcatatacataatcttacaaa-cgcaatgttgttgtaaacataa--cattattgtagaatatgtttgtctttgtatat |
44391953 |
T |
|
| Q |
201 |
acacttatcgtataccatataagtcacttagacatgggtcacctgagaaaatttagtcatacataacaaaggtttccttgtaacagcaaagactatttgt |
300 |
Q |
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|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44391954 |
acacttatcgtataccatacaagtcacttagacatgggtcacctgagaaaatttagtcatacataacaaaggtttccttgtaacagcaaagactatttgt |
44392053 |
T |
|
| Q |
301 |
cgtaacttgtcagtaatatgt |
321 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
44392054 |
cgtaacttgtcagtaatatgt |
44392074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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