View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2606_low_16 (Length: 282)
Name: NF2606_low_16
Description: NF2606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2606_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 3003669 - 3003936
Alignment:
| Q |
1 |
ttgttacaaaagcggtcacatctttagcctcatgattttcatgtccaacttgcctcgggatgtgaaatttccagtgcaaaagctaatccaaacacatact |
100 |
Q |
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| T |
3003669 |
ttgttacaaaagcggtcacatctttagcctcacgattttcatgtccagcttgcctcgggacgtgaaatttccagtgcaaaagctaatccaaacacatact |
3003768 |
T |
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| Q |
101 |
acatcttaccgactactaatatctctaataattatnnnnnnnnnnnnnnnnnnncattctggtaattaagagttcatatgtgatataactaaagttttgt |
200 |
Q |
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| T |
3003769 |
acatcttaccgactactaatatctctaataattataaaaataaaaaataaaaaacattctgataattaagagttcatatgtgatataactaaagttttgt |
3003868 |
T |
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| Q |
201 |
ttaaacacatactattaccgattaaaagtataccagaaggctacacattccaaaatttatgtactaac |
268 |
Q |
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| T |
3003869 |
ttaaacacatactattaccgattaaaagtataccagaaggctacacattccaaaatttatgtactaac |
3003936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 96
Target Start/End: Complemental strand, 11429835 - 11429782
Alignment:
| Q |
43 |
gtccaacttgcctcgggatgtgaaatttccagtgcaaaagctaatccaaacaca |
96 |
Q |
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| T |
11429835 |
gtccaacttgcctcgggacgtgatatttacaccgcaaaagctattccaaacaca |
11429782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 34 - 100
Target Start/End: Original strand, 6726026 - 6726092
Alignment:
| Q |
34 |
gattttcatgtccaacttgcctcgggatgtgaaatttccagtgcaaaagctaatccaaacacatact |
100 |
Q |
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| T |
6726026 |
gatttccaagtcctacttgcctcgggatgtgagatttacggtgcaaaagctaatccaaactcatact |
6726092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 94
Target Start/End: Original strand, 51305329 - 51305388
Alignment:
| Q |
35 |
attttcatgtccaacttgcctcgggatgtgaaatttccagtgcaaaagctaatccaaaca |
94 |
Q |
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| T |
51305329 |
attttcacatccaacttgcctcgggacgtgatattttcactgcaaaagctaatccaaaca |
51305388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 101
Target Start/End: Complemental strand, 17302352 - 17302300
Alignment:
| Q |
49 |
cttgcctcgggatgtgaaatttccagtgcaaaagctaatccaaacacatacta |
101 |
Q |
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| T |
17302352 |
cttgccccgggatgtgatatttgcattgcaaaagctaatccaaacacgtacta |
17302300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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