View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2606_low_18 (Length: 265)
Name: NF2606_low_18
Description: NF2606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2606_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 134; Significance: 8e-70; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 63 - 244
Target Start/End: Original strand, 49623367 - 49623546
Alignment:
| Q |
63 |
ctgagcattttttaccaaacaaacttgaacatcacaaattaacactttaaataactcttccaaaaaattagtgatatgtnnnnnnnggagggcaaactac |
162 |
Q |
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| T |
49623367 |
ctgagcattttttaccaaacaaacttgaacatcacaaattaacactttaaataactcttccaaaaaattagtgatatgtaaaaaaaga--ggcaaactac |
49623464 |
T |
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| Q |
163 |
tacaaaaactaacatgagaacattatatttgccaacaacaacaaaacaaagaaggtaacaacatataataacaccgggtcgt |
244 |
Q |
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| T |
49623465 |
tacaaaaactagcatgagaacatcgtatttgccaacaacaacaaaacaaagaaggtaacaacatataataacaccgggtcgt |
49623546 |
T |
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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 49
Target Start/End: Original strand, 49623319 - 49623352
Alignment:
| Q |
16 |
aatatgagattaaaggattgaaacattttatctc |
49 |
Q |
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| T |
49623319 |
aatatgagattaaagggttgaaacattttatctc |
49623352 |
T |
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