View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2606_low_2 (Length: 766)
Name: NF2606_low_2
Description: NF2606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2606_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 380; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 310 - 756
Target Start/End: Original strand, 32764485 - 32764930
Alignment:
| Q |
310 |
gtaatgaaaaatcaatatgtaacaaacggatgattttgtcacnnnnnnnnnnngttgtaacaaacgtgctcaatgtaagtacaaacctgtacgaaggagg |
409 |
Q |
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| T |
32764485 |
gtaatgaaaaatcaatatgtaacaaacggatgattttgtcacaaaaaaaaaa-gttgtaacaaacgtgctcaatgtaagtacaaacctgtacgaaggagg |
32764583 |
T |
|
| Q |
410 |
acttttgggccacatctcaaaattcaccttagaatgaggagacatgagatgaaaataataatcaacccactcaaccttttgttccaggttcttggtcatc |
509 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
32764584 |
acttttgggccacatctcaaaattcaacttagaatgaggagacatgagatgaaaataataatcaacccactcaaccttttgttcaaggttcttggtcatc |
32764683 |
T |
|
| Q |
510 |
tttgttccatagccatcaaatttaccactagatggatcatttgcatatgtctctttctccttttgagggagagnnnnnnnctcctggcccacatcttgca |
609 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
32764684 |
tttgttccatagccatcaaatttaccactagatggatcatttgcatatgtctctttctccttttgagggagagaaaaaaactcctggcccacatcttgca |
32764783 |
T |
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| Q |
610 |
aactttgaataagtttttgagatataccatggtcagtgatcacaaagaaaccccactcagaagcagcttcattgattttcttcactaaaaggttatgtgg |
709 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32764784 |
aactttgaataagtttttgagatataccatggtcagtgatcacaaagaaaccccactcagaagcagcttcattgattttcttcactaaaaggttatgtgg |
32764883 |
T |
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| Q |
710 |
ttgagacaatgaaatcataggcacagtaacaccctccatggcctttg |
756 |
Q |
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| T |
32764884 |
ttgagacaatgaaatcataggcacagtaacaccctccatggcctttg |
32764930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 5 - 262
Target Start/End: Original strand, 32764180 - 32764437
Alignment:
| Q |
5 |
catcatttggaacaagtagtgtaatggcagacatatcagtatggggctcaactcctaatgccaattcaggttgtggacatggtggatacatatttatctt |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32764180 |
catcatttggaacaagtagtgtaatggcagacatatcagtatggggctcaactcctaatgccaattcaggttgtggacatggtggatacatatttatctt |
32764279 |
T |
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| Q |
105 |
catttctaattctatttcttcacctcccaaacaagacttcaaagtcttactctccaattctagtccttcagacaaaagctccaaaatattgtctgtcacc |
204 |
Q |
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| T |
32764280 |
catttctaattctatttcttcacctcccaaacaagacttcaaagtcttactctccaattctagtccttcagacaaaagctccaaaatattgtctgtcacc |
32764379 |
T |
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| Q |
205 |
cttaacatctctttattgtattcttgtactacttccctaccacacacaaaataatata |
262 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32764380 |
cttaacatctctttattgtattcttgtactacttccctaccacacacaaaataatata |
32764437 |
T |
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