View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2606_low_3 (Length: 703)
Name: NF2606_low_3
Description: NF2606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2606_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 507; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 16 - 534
Target Start/End: Original strand, 26431346 - 26431864
Alignment:
| Q |
16 |
accaattcatattaacaagaaaccaaatgacacataaaagaaagaaaaggtacaacaaatgcaatttgaactaaacaagttgaaaattttgaatttagat |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26431346 |
accaattcatattaacaagaaaccaaatgacacataaaagaaagaaaaggtacaacaaatgcaatttgaactaaacaagttgaaaattttgaatttagat |
26431445 |
T |
|
| Q |
116 |
gaaaaagagaaagttgtataattcacctgaatcttgtgatctttgaggtcagggtgatcaaaagctggttggtgtgaaacatgaacacagtcaataatat |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26431446 |
gaaaaagagaaagttgtataattcacctgaatcttgtgatctttgagttcagggtgatcaaaagctggttggtgtgaaacatgaacacagtcaataatat |
26431545 |
T |
|
| Q |
216 |
ctccatcaggactctgctttcacaaaaccataaaaaagtacacttgcataaatgaactatgtttatgaatggtcctaaaaatctagaaactaaatcaatt |
315 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
26431546 |
ctccatcaggactctgctttcacaaaaccataaaaaagtacacttgcataaatgaactatgtttatgaatggtcctaaaaatctagaaactaaataaatt |
26431645 |
T |
|
| Q |
316 |
acacttcttaacaaaatttacaaaagagtgacaccaatacaaaaatatactaaaattctgttcaaattgcatgaacaaaaacaatagcagattttccatt |
415 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26431646 |
acacttgttaacaaaatttacaaaagagtgacaccaatacaaaaatatactaaaattctgttcaaattgcatgaacaaaaacaatagcagattttccatt |
26431745 |
T |
|
| Q |
416 |
attgtagtgaaaaagactaaagaatctcccaactcccaagaactaaagttcctttcaaacccaaaaagtttaattttttacaaatcccaattagaaataa |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26431746 |
attgtagtgaaaaagactaaagaatctcccaactcccaagaactaaagttcctttcaaacccaaaaagtttaattttttacaaatcccaattagaaataa |
26431845 |
T |
|
| Q |
516 |
aaccgttatgcaaccaatg |
534 |
Q |
| |
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||||||||||||||||||| |
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| T |
26431846 |
aaccgttatgcaaccaatg |
26431864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 585 - 685
Target Start/End: Original strand, 26431917 - 26432017
Alignment:
| Q |
585 |
cttatctctaccttgatggacttaacaggtggtctgttcaaattcttcaagtgcttcttaacctcaagcttctgaattgaaccaccactattgcccccgt |
684 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26431917 |
cttatctctaccttgatggacttaacaggtggtctgttcaaattcttcaagtgcttcttaacctcaagcttctgaattgaaccaccactattgcccccgt |
26432016 |
T |
|
| Q |
685 |
t |
685 |
Q |
| |
|
| |
|
|
| T |
26432017 |
t |
26432017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 9e-35; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 134 - 241
Target Start/End: Original strand, 54748636 - 54748742
Alignment:
| Q |
134 |
taattcacctgaatcttgtgatctttgaggtcagggtgatcaaaagctggttggtgtgaaacatgaacacagtcaataatatctccatcaggactctgct |
233 |
Q |
| |
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|||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||| ||||||||||| ||||| |
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| T |
54748636 |
taattcacctaaatcttgtgatttttgaggtcagggtgatcaaaagctggttggtgtg-aacatgaacacaatcaacaatatatccatcaggaccctgct |
54748734 |
T |
|
| Q |
234 |
ttcacaaa |
241 |
Q |
| |
|
|||||||| |
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|
| T |
54748735 |
ttcacaaa |
54748742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 134 - 241
Target Start/End: Original strand, 54765363 - 54765469
Alignment:
| Q |
134 |
taattcacctgaatcttgtgatctttgaggtcagggtgatcaaaagctggttggtgtgaaacatgaacacagtcaataatatctccatcaggactctgct |
233 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||| ||||||||||| ||||| |
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| T |
54765363 |
taattcacctaaatcttgtgatttttgaggtcagggtgatcaaaagctggttggtgtg-aacatgaacacaatcaacaatatatccatcaggaccctgct |
54765461 |
T |
|
| Q |
234 |
ttcacaaa |
241 |
Q |
| |
|
|||||||| |
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|
| T |
54765462 |
ttcacaaa |
54765469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 9e-32; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 133 - 241
Target Start/End: Complemental strand, 23235800 - 23235693
Alignment:
| Q |
133 |
ataattcacctgaatcttgtgatctttgaggtcagggtgatcaaaagctggttggtgtgaaacatgaacacagtc-aataatatctccatcaggactctg |
231 |
Q |
| |
|
||||||||||||||||||||||| |||||||| || |||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||| ||| |
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| T |
23235800 |
ataattcacctgaatcttgtgatttttgaggtgagagtgatcaaaagccggttggtgtgaaacatgaacacagtcaaataatatctctatcagga--ctg |
23235703 |
T |
|
| Q |
232 |
ctttcacaaa |
241 |
Q |
| |
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|||||||||| |
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|
| T |
23235702 |
ctttcacaaa |
23235693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 140 - 232
Target Start/End: Complemental strand, 36691418 - 36691326
Alignment:
| Q |
140 |
acctgaatcttgtgatctttgaggtcagggtgatcaaaagctggttggtgtgaaacatgaacacagtcaataatatctccatcaggactctgc |
232 |
Q |
| |
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|||||||| ||||||||||||||| ||| ||||||||||||||||| | ||||||| | ||||| || |||||||| ||||| ||||||||| |
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| T |
36691418 |
acctgaattttgtgatctttgaggaaaggatgatcaaaagctggttgctttgaaacaggtacacaatctataatatccccatctggactctgc |
36691326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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