View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2606_low_6 (Length: 448)

Name: NF2606_low_6
Description: NF2606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2606_low_6
NF2606_low_6
[»] chr4 (36 HSPs)
chr4 (233-434)||(10708967-10709168)
chr4 (233-434)||(10922737-10922938)
chr4 (1-168)||(10709234-10709401)
chr4 (1-168)||(10923004-10923171)
chr4 (1-168)||(10666996-10667164)
chr4 (1-168)||(10881141-10881309)
chr4 (7-168)||(10700173-10700330)
chr4 (7-168)||(10913943-10914100)
chr4 (1-168)||(10671849-10672012)
chr4 (1-168)||(10885489-10885652)
chr4 (1-167)||(10682241-10682406)
chr4 (1-167)||(10717491-10717657)
chr4 (1-167)||(10895881-10896046)
chr4 (1-167)||(10931261-10931427)
chr4 (3-168)||(10703126-10703287)
chr4 (3-168)||(10916896-10917057)
chr4 (231-329)||(10667227-10667325)
chr4 (231-329)||(10881372-10881470)
chr4 (3-160)||(17218894-17219051)
chr4 (3-168)||(10725589-10725755)
chr4 (3-168)||(10939358-10939524)
chr4 (241-329)||(10702965-10703053)
chr4 (241-329)||(10916735-10916823)
chr4 (231-329)||(10672072-10672170)
chr4 (231-329)||(10885712-10885810)
chr4 (231-329)||(10700012-10700110)
chr4 (231-329)||(10913782-10913880)
chr4 (80-168)||(22068526-22068614)
chr4 (3-62)||(22067901-22067960)
chr4 (231-314)||(10682470-10682553)
chr4 (231-314)||(10896110-10896193)
chr4 (3-63)||(17216395-17216455)
chr4 (231-314)||(10717721-10717804)
chr4 (231-314)||(10931491-10931574)
chr4 (249-303)||(17216048-17216102)
chr4 (103-163)||(22198421-22198481)
[»] chr2 (1 HSPs)
chr2 (12-63)||(19898827-19898878)


Alignment Details
Target: chr4 (Bit Score: 170; Significance: 4e-91; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 233 - 434
Target Start/End: Complemental strand, 10709168 - 10708967
Alignment:
Q  233 aagagtttttaaaagataagttctaaacaatttacagttacttagtaaagcggaatgaaacaaaatatagtcaaactcaatattctaatgaatattatca 332  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||    
T  10709168 aagagcttttaaaagataagttctaaacaatttacagttacttagtaaagcggaatgaaacaaaatatagttatactcaatattctaatggatattatca 10709069  T
Q  333 tacttaggcttcctttgcgtgagaaaattaaaggggctgtttttgatctgaatggagatggtgctcccggttcaaatggcttcgggggtcacttttatca 432  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| || |||||||||||||||||||||||||    
T  10709068 tacttaggcttcctttgcgtgagaaaattaaaggggctgtttttgatatgaatggagatgctgctcccggtccagatggcttcgggggtcacttttatca 10708969  T
Q  433 ta 434  Q
    ||    
T  10708968 ta 10708967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 233 - 434
Target Start/End: Complemental strand, 10922938 - 10922737
Alignment:
Q  233 aagagtttttaaaagataagttctaaacaatttacagttacttagtaaagcggaatgaaacaaaatatagtcaaactcaatattctaatgaatattatca 332  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||    
T  10922938 aagagcttttaaaagataagttctaaacaatttacagttacttagtaaagcggaatgaaacaaaatatagttatactcaatattctaatggatattatca 10922839  T
Q  333 tacttaggcttcctttgcgtgagaaaattaaaggggctgtttttgatctgaatggagatggtgctcccggttcaaatggcttcgggggtcacttttatca 432  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| || |||||||||||||||||||||||||    
T  10922838 tacttaggcttcctttgcgtgagaaaattaaaggggctgtttttgatatgaatggagatgctgctcccggtccagatggcttcgggggtcacttttatca 10922739  T
Q  433 ta 434  Q
    ||    
T  10922738 ta 10922737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 10709401 - 10709234
Alignment:
Q  1 atcaatatgatgaatgatgaaaacaactagttttatatataacatgttgaagatgtaacaaaataaattgtatgtatagaagtatcattgggtatttgtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||| |||||||||||||||||||||    
T  10709401 atcaatatgatgaatgatgaaaacaactagttttatatataacatgtcgaagatgtaacaaaataaaatatatgtataaaagtatcattgggtatttgtt 10709302  T
Q  101 tttgttgacaacattttagattgcagttataacatgtcaatgtaaaaattgtatgtaatacccatatg 168  Q
    |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  10709301 tttgttgagaacattttagattgcagttataacatgtcaatgtagaaattgtatgtaatacccatatg 10709234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 10923171 - 10923004
Alignment:
Q  1 atcaatatgatgaatgatgaaaacaactagttttatatataacatgttgaagatgtaacaaaataaattgtatgtatagaagtatcattgggtatttgtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||| |||||||||||||||||||||    
T  10923171 atcaatatgatgaatgatgaaaacaactagttttatatataacatgtcgaagatgtaacaaaataaaatatatgtataaaagtatcattgggtatttgtt 10923072  T
Q  101 tttgttgacaacattttagattgcagttataacatgtcaatgtaaaaattgtatgtaatacccatatg 168  Q
    |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  10923071 tttgttgagaacattttagattgcagttataacatgtcaatgtagaaattgtatgtaatacccatatg 10923004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 10666996 - 10667164
Alignment:
Q  1 atcaatatgatgaatgatgaaaacaactagttttatatat-aacatgttgaagatgtaacaaaataaattgtatgtatagaagtatcattgggtatttgt 99  Q
    ||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||    
T  10666996 atcaatatgttgaatgatgaaaacaactcgttttatatattaacatgttgaagatgtaacacaataaaatgtatgtataaaagtatcattgggtatttgt 10667095  T
Q  100 ttttgttgacaacattttagattgcagttataacatgtcaatgtaaaaattgtatgtaatacccatatg 168  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  10667096 ttttgttgagaacattttagattgcagttataacatgtcaatgtagaaattgtatgtaatacccatatg 10667164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 10881141 - 10881309
Alignment:
Q  1 atcaatatgatgaatgatgaaaacaactagttttatatat-aacatgttgaagatgtaacaaaataaattgtatgtatagaagtatcattgggtatttgt 99  Q
    ||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||    
T  10881141 atcaatatgttgaatgatgaaaacaactcgttttatatattaacatgttgaagatgtaacacaataaaatgtatgtataaaagtatcattgggtatttgt 10881240  T
Q  100 ttttgttgacaacattttagattgcagttataacatgtcaatgtaaaaattgtatgtaatacccatatg 168  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  10881241 ttttgttgagaacattttagattgcagttataacatgtcaatgtagaaattgtatgtaatacccatatg 10881309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 7 - 168
Target Start/End: Complemental strand, 10700330 - 10700173
Alignment:
Q  7 atgatgaatgatgaaaacaactagttttatatataacatgttgaagatgtaacaaaataaattgtatgtatagaagtatcattgggtatttgtttttgtt 106  Q
    |||| |||||||||||||||||| ||||||||||||||  |||| |||||||||||| || ||||   |||| |||||||||||||||||||||||||||    
T  10700330 atgacgaatgatgaaaacaactaattttatatataacacattgatgatgtaacaaaa-aatttgt---tataaaagtatcattgggtatttgtttttgtt 10700235  T
Q  107 gacaacattttagattgcagttataacatgtcaatgtaaaaattgtatgtaatacccatatg 168  Q
    || || ||||||||||||||||||||||||||||| |  |||||||||||||||||||||||    
T  10700234 gagaaaattttagattgcagttataacatgtcaatatggaaattgtatgtaatacccatatg 10700173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 7 - 168
Target Start/End: Complemental strand, 10914100 - 10913943
Alignment:
Q  7 atgatgaatgatgaaaacaactagttttatatataacatgttgaagatgtaacaaaataaattgtatgtatagaagtatcattgggtatttgtttttgtt 106  Q
    |||| |||||||||||||||||| ||||||||||||||  |||| |||||||||||| || ||||   |||| |||||||||||||||||||||||||||    
T  10914100 atgacgaatgatgaaaacaactaattttatatataacacattgatgatgtaacaaaa-aatttgt---tataaaagtatcattgggtatttgtttttgtt 10914005  T
Q  107 gacaacattttagattgcagttataacatgtcaatgtaaaaattgtatgtaatacccatatg 168  Q
    || || ||||||||||||||||||||||||||||| |  |||||||||||||||||||||||    
T  10914004 gagaaaattttagattgcagttataacatgtcaatatggaaattgtatgtaatacccatatg 10913943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 10671849 - 10672012
Alignment:
Q  1 atcaatatgatgaatgatgaaaacaactagttttatatataacatgttgaagatgtaacaaaataaattgtatgtatagaagtatcattgggtatttgtt 100  Q
    |||||||||| |||||||||||||| ||||||||||||||||||  |||| |||||||||||| || ||||   |||| |||||||||||||||||||||    
T  10671849 atcaatatgacgaatgatgaaaacagctagttttatatataacacattgatgatgtaacaaaa-aatttgt---tataaaagtatcattgggtatttgtt 10671944  T
Q  101 tttgttgacaacattttagattgcagttataacatgtcaatgtaaaaattgtatgtaatacccatatg 168  Q
    |||||||| || |||||| ||||||||||||||||||||||||  ||||| || ||||||||||||||    
T  10671945 tttgttgagaaaattttatattgcagttataacatgtcaatgtggaaattatacgtaatacccatatg 10672012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 10885489 - 10885652
Alignment:
Q  1 atcaatatgatgaatgatgaaaacaactagttttatatataacatgttgaagatgtaacaaaataaattgtatgtatagaagtatcattgggtatttgtt 100  Q
    |||||||||| |||||||||||||| ||||||||||||||||||  |||| |||||||||||| || ||||   |||| |||||||||||||||||||||    
T  10885489 atcaatatgacgaatgatgaaaacagctagttttatatataacacattgatgatgtaacaaaa-aatttgt---tataaaagtatcattgggtatttgtt 10885584  T
Q  101 tttgttgacaacattttagattgcagttataacatgtcaatgtaaaaattgtatgtaatacccatatg 168  Q
    |||||||| || |||||| ||||||||||||||||||||||||  ||||| || ||||||||||||||    
T  10885585 tttgttgagaaaattttatattgcagttataacatgtcaatgtggaaattatacgtaatacccatatg 10885652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 10682241 - 10682406
Alignment:
Q  1 atcaatatgatgaatgatgaaaacaactagttttatatataacatgttgaagatgtaacaaaataaattgt-atgtatagaagtatcattgggtatttgt 99  Q
    |||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||| | ||||| || |||| |||||||||||  |||||||    
T  10682241 atcaatatgatgaatgatgaaa-caactagttttatatataacacattgaagatgtaacaaaa-acattgttatatataaaagtatcattgtatatttgt 10682338  T
Q  100 ttttgttgacaacattttagattgcagttataacatgtcaatgtaaaaattgtatgtaatacccatat 167  Q
    |||  |||| || ||||||||||||||||||||||||||||| |  ||||||||||||||||||||||    
T  10682339 tttaattgagaaaattttagattgcagttataacatgtcaatatggaaattgtatgtaatacccatat 10682406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 10717491 - 10717657
Alignment:
Q  1 atcaatatgatgaatgatgaaaacaactagttttatatataacatgttgaagatgtaacaaaataaattgt-atgtatagaagtatcattgggtatttgt 99  Q
    |||||||||||||||||| ||||||||| |||||||||||||||  ||||||||||||||||| | ||||| || |||| |||||||||||  ||| |||    
T  10717491 atcaatatgatgaatgataaaaacaacttgttttatatataacacattgaagatgtaacaaaa-atattgttatatataaaagtatcattgtatatatgt 10717589  T
Q  100 ttttgttgacaacattttagattgcagttataacatgtcaatgtaaaaattgtatgtaatacccatat 167  Q
    |||| |||| || | ||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  10717590 ttttattgagaaaaatttagattgcagttataacatgtcaatatgaaaattgtatgtaatacccatat 10717657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 10895881 - 10896046
Alignment:
Q  1 atcaatatgatgaatgatgaaaacaactagttttatatataacatgttgaagatgtaacaaaataaattgt-atgtatagaagtatcattgggtatttgt 99  Q
    |||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||| | ||||| || |||| |||||||||||  |||||||    
T  10895881 atcaatatgatgaatgatgaaa-caactagttttatatataacacattgaagatgtaacaaaa-acattgttatatataaaagtatcattgtatatttgt 10895978  T
Q  100 ttttgttgacaacattttagattgcagttataacatgtcaatgtaaaaattgtatgtaatacccatat 167  Q
    |||  |||| || ||||||||||||||||||||||||||||| |  ||||||||||||||||||||||    
T  10895979 tttaattgagaaaattttagattgcagttataacatgtcaatatggaaattgtatgtaatacccatat 10896046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 10931261 - 10931427
Alignment:
Q  1 atcaatatgatgaatgatgaaaacaactagttttatatataacatgttgaagatgtaacaaaataaattgt-atgtatagaagtatcattgggtatttgt 99  Q
    |||||||||||||||||| ||||||||| |||||||||||||||  ||||||||||||||||| | ||||| || |||| |||||||||||  ||| |||    
T  10931261 atcaatatgatgaatgataaaaacaacttgttttatatataacacattgaagatgtaacaaaa-atattgttatatataaaagtatcattgtatatatgt 10931359  T
Q  100 ttttgttgacaacattttagattgcagttataacatgtcaatgtaaaaattgtatgtaatacccatat 167  Q
    |||| |||| || | ||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  10931360 ttttattgagaaaaatttagattgcagttataacatgtcaatatgaaaattgtatgtaatacccatat 10931427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 3 - 168
Target Start/End: Complemental strand, 10703287 - 10703126
Alignment:
Q  3 caatatgatgaatgatgaaaacaactagttttatatataacatgttgaagatgtaacaaaataaattgtatgtatagaagtatcattgggtatttgtttt 102  Q
    |||||||||||||| | ||||||||| |||||||||||||||  |||| ||||||||||||   ||| | | |||| |||||||||||||||||||||||    
T  10703287 caatatgatgaatggtaaaaacaacttgttttatatataacacattgatgatgtaacaaaa---attttgt-tataaaagtatcattgggtatttgtttt 10703192  T
Q  103 tgttgacaacattttagattgcagttataacatgtcaatgtaaaaattgtatgtaatacccatatg 168  Q
    |||||| || ||||||||||| ||||  |||||||||||||  |||||||||||||||||||||||    
T  10703191 tgttgagaaaattttagattgtagtttaaacatgtcaatgtggaaattgtatgtaatacccatatg 10703126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 3 - 168
Target Start/End: Complemental strand, 10917057 - 10916896
Alignment:
Q  3 caatatgatgaatgatgaaaacaactagttttatatataacatgttgaagatgtaacaaaataaattgtatgtatagaagtatcattgggtatttgtttt 102  Q
    |||||||||||||| | ||||||||| |||||||||||||||  |||| ||||||||||||   ||| | | |||| |||||||||||||||||||||||    
T  10917057 caatatgatgaatggtaaaaacaacttgttttatatataacacattgatgatgtaacaaaa---attttgt-tataaaagtatcattgggtatttgtttt 10916962  T
Q  103 tgttgacaacattttagattgcagttataacatgtcaatgtaaaaattgtatgtaatacccatatg 168  Q
    |||||| || ||||||||||| ||||  |||||||||||||  |||||||||||||||||||||||    
T  10916961 tgttgagaaaattttagattgtagtttaaacatgtcaatgtggaaattgtatgtaatacccatatg 10916896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 231 - 329
Target Start/End: Original strand, 10667227 - 10667325
Alignment:
Q  231 gaaagagtttttaaaagataagttctaaacaatttacagttacttagtaaagcggaatgaaacaaaatatagtcaaactcaatattctaatgaatatta 329  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||    
T  10667227 gaaagagcttttaaaagataaattctaaacaatttacagttacttagtaaagcgggatgaaacaaaatatagttaaactcaatattctaatggatatta 10667325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 231 - 329
Target Start/End: Original strand, 10881372 - 10881470
Alignment:
Q  231 gaaagagtttttaaaagataagttctaaacaatttacagttacttagtaaagcggaatgaaacaaaatatagtcaaactcaatattctaatgaatatta 329  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||    
T  10881372 gaaagagcttttaaaagataaattctaaacaatttacagttacttagtaaagcgggatgaaacaaaatatagttaaactcaatattctaatggatatta 10881470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 3 - 160
Target Start/End: Complemental strand, 17219051 - 17218894
Alignment:
Q  3 caatatgatgaatgatgaaaacaactagttttatatataacatgttgaagatgtaacaaaataaattgtatgtatagaagtatcattgggtatttgtttt 102  Q
    ||||||| ||||||||||||||||||  ||||||||||||||  ||||||||||||| |||    |  |||  ||| |||||||||||| ||||||||||    
T  17219051 caatatgttgaatgatgaaaacaactgattttatatataacacattgaagatgtaaccaaaagtttattataaataaaagtatcattggatatttgtttt 17218952  T
Q  103 tgttgacaacattttagattgcagttataacatgtcaatgtaaaaattgtatgtaata 160  Q
    |||||| || |||||||||||||||||||||||||||||||  ||| |||||||||||    
T  17218951 tgttgagaaaattttagattgcagttataacatgtcaatgtggaaactgtatgtaata 17218894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 3 - 168
Target Start/End: Original strand, 10725589 - 10725755
Alignment:
Q  3 caatatgatgaatgatgaaaacaactagtttt-atatataacatgttgaagatgtaacaaaataaattgt-atgtatagaagtatcattgggtatttgtt 100  Q
    |||||||| ||||||||||||||||||||||| ||||||| ||  ||||||||||||||||| |  || | ||  ||| | |||||||||||||||||||    
T  10725589 caatatgaggaatgatgaaaacaactagtttttatatatatcacattgaagatgtaacaaaaaattttattataaataaaggtatcattgggtatttgtt 10725688  T
Q  101 tttgttgacaacattttagattgcagttataacatgtcaatgtaaaaattgtatgtaatacccatatg 168  Q
    ||| |||| || |||||| |||||||||||| |||||||| ||  |||||||||||||||||||||||    
T  10725689 ttt-ttgagaaaattttaaattgcagttatagcatgtcaaagtggaaattgtatgtaatacccatatg 10725755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 3 - 168
Target Start/End: Original strand, 10939358 - 10939524
Alignment:
Q  3 caatatgatgaatgatgaaaacaactagtttt-atatataacatgttgaagatgtaacaaaataaattgt-atgtatagaagtatcattgggtatttgtt 100  Q
    |||||||| ||||||||||||||||||||||| ||||||| ||  ||||||||||||||||| |  || | ||  ||| | |||||||||||||||||||    
T  10939358 caatatgaggaatgatgaaaacaactagtttttatatatatcacattgaagatgtaacaaaaaattttattataaataaaggtatcattgggtatttgtt 10939457  T
Q  101 tttgttgacaacattttagattgcagttataacatgtcaatgtaaaaattgtatgtaatacccatatg 168  Q
    ||| |||| || |||||| |||||||||||| |||||||| ||  |||||||||||||||||||||||    
T  10939458 ttt-ttgagaaaattttaaattgcagttatagcatgtcaaagtggaaattgtatgtaatacccatatg 10939524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 241 - 329
Target Start/End: Complemental strand, 10703053 - 10702965
Alignment:
Q  241 ttaaaagataagttctaaacaatttacagttacttagtaaagcggaatgaaacaaaatatagtcaaactcaatattctaatgaatatta 329  Q
    |||||| ||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  10703053 ttaaaatataagttctaaacaagttacaattacttaataaagcggaatgaaacaaaatatagttaaactcaatattctaatggatatta 10702965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 241 - 329
Target Start/End: Complemental strand, 10916823 - 10916735
Alignment:
Q  241 ttaaaagataagttctaaacaatttacagttacttagtaaagcggaatgaaacaaaatatagtcaaactcaatattctaatgaatatta 329  Q
    |||||| ||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  10916823 ttaaaatataagttctaaacaagttacaattacttaataaagcggaatgaaacaaaatatagttaaactcaatattctaatggatatta 10916735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 231 - 329
Target Start/End: Original strand, 10672072 - 10672170
Alignment:
Q  231 gaaagagtttttaaaagataagttctaaacaatttacagttacttagtaaagcggaatgaaacaaaatatagtcaaactcaatattctaatgaatatta 329  Q
    ||||||| | |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||| ||||| |||||||| ||| ||||||    
T  10672072 gaaagagctcttaaaagataagttctaaacaagttacaattacttagtaaagcggaatgaaacaaaatttagttaaactgaatattctgatggatatta 10672170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 231 - 329
Target Start/End: Original strand, 10885712 - 10885810
Alignment:
Q  231 gaaagagtttttaaaagataagttctaaacaatttacagttacttagtaaagcggaatgaaacaaaatatagtcaaactcaatattctaatgaatatta 329  Q
    ||||||| | |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||| ||||| |||||||| ||| ||||||    
T  10885712 gaaagagctcttaaaagataagttctaaacaagttacaattacttagtaaagcggaatgaaacaaaatttagttaaactgaatattctgatggatatta 10885810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 231 - 329
Target Start/End: Complemental strand, 10700110 - 10700012
Alignment:
Q  231 gaaagagtttttaaaagataagttctaaacaatttacagttacttagtaaagcggaatgaaacaaaatatagtcaaactcaatattctaatgaatatta 329  Q
    ||||||| | |||||||||||||||||||||| ||||| ||| |||||| |||||||||||||||||| |||| |||||||||||||| ||| ||||||    
T  10700110 gaaagagctcttaaaagataagttctaaacaagttacaattatttagtacagcggaatgaaacaaaatttagttaaactcaatattctgatggatatta 10700012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 231 - 329
Target Start/End: Complemental strand, 10913880 - 10913782
Alignment:
Q  231 gaaagagtttttaaaagataagttctaaacaatttacagttacttagtaaagcggaatgaaacaaaatatagtcaaactcaatattctaatgaatatta 329  Q
    ||||||| | |||||||||||||||||||||| ||||| ||| |||||| |||||||||||||||||| |||| |||||||||||||| ||| ||||||    
T  10913880 gaaagagctcttaaaagataagttctaaacaagttacaattatttagtacagcggaatgaaacaaaatttagttaaactcaatattctgatggatatta 10913782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 80 - 168
Target Start/End: Original strand, 22068526 - 22068614
Alignment:
Q  80 aagtatcattgggtatttgtttttgttgacaacattttagattgcagttataacatgtcaatgtaaaaattgtatgtaatacccatatg 168  Q
    ||||||||||| |||||||||||||||||  | ||||||| ||||||||||||| ||||||||| ||||||||| ||||||||||||||    
T  22068526 aagtatcattgagtatttgtttttgttgagtaaattttagtttgcagttataacttgtcaatgtgaaaattgtaagtaatacccatatg 22068614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 3 - 62
Target Start/End: Original strand, 22067901 - 22067960
Alignment:
Q  3 caatatgatgaatgatgaaaacaactagttttatatataacatgttgaagatgtaacaaa 62  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  22067901 caatatgatgaatgatgaaaacaactagttttatatataacacattgaagatgtaacaaa 22067960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 231 - 314
Target Start/End: Original strand, 10682470 - 10682553
Alignment:
Q  231 gaaagagtttttaaaagataagttctaaacaatttacagttacttagtaaagcggaatgaaacaaaatatagtcaaactcaata 314  Q
    ||||||| | |||||| ||||||||||||| | ||||| ||| || || |||||||||||||||| ||||||| ||||||||||    
T  10682470 gaaagagctcttaaaacataagttctaaacgagttacaattatttcgtgaagcggaatgaaacaatatatagttaaactcaata 10682553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 231 - 314
Target Start/End: Original strand, 10896110 - 10896193
Alignment:
Q  231 gaaagagtttttaaaagataagttctaaacaatttacagttacttagtaaagcggaatgaaacaaaatatagtcaaactcaata 314  Q
    ||||||| | |||||| ||||||||||||| | ||||| ||| || || |||||||||||||||| ||||||| ||||||||||    
T  10896110 gaaagagctcttaaaacataagttctaaacgagttacaattatttcgtgaagcggaatgaaacaatatatagttaaactcaata 10896193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 17216455 - 17216395
Alignment:
Q  3 caatatgatgaatgatgaaaacaactagttttatatataacatgttgaagatgtaacaaaa 63  Q
    ||||||||||||| || |||||||||||||||||||||||||  | |||||||||| ||||    
T  17216455 caatatgatgaattataaaaacaactagttttatatataacacatcgaagatgtaagaaaa 17216395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 231 - 314
Target Start/End: Original strand, 10717721 - 10717804
Alignment:
Q  231 gaaagagtttttaaaagataagttctaaacaatttacagttacttagtaaagcggaatgaaacaaaatatagtcaaactcaata 314  Q
    ||||||| | |||||| ||||||||||||| | ||||| ||| || || ||||| |||||||||| ||||||| ||||||||||    
T  10717721 gaaagagctcttaaaacataagttctaaacgagttacaattatttcgtgaagcgcaatgaaacaatatatagttaaactcaata 10717804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 231 - 314
Target Start/End: Original strand, 10931491 - 10931574
Alignment:
Q  231 gaaagagtttttaaaagataagttctaaacaatttacagttacttagtaaagcggaatgaaacaaaatatagtcaaactcaata 314  Q
    ||||||| | |||||| ||||||||||||| | ||||| ||| || || ||||| |||||||||| ||||||| ||||||||||    
T  10931491 gaaagagctcttaaaacataagttctaaacgagttacaattatttcgtgaagcgcaatgaaacaatatatagttaaactcaata 10931574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 249 - 303
Target Start/End: Complemental strand, 17216102 - 17216048
Alignment:
Q  249 taagttctaaacaatttacagttacttagtaaagcggaatgaaacaaaatatagt 303  Q
    |||||| ||||| | ||||| ||||||||||||| ||||||||||||||||||||    
T  17216102 taagttttaaacgagttacaattacttagtaaagtggaatgaaacaaaatatagt 17216048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 103 - 163
Target Start/End: Complemental strand, 22198481 - 22198421
Alignment:
Q  103 tgttgacaacattttagattgcagttataacatgtcaatgtaaaaattgtatgtaataccc 163  Q
    |||| |||| |||||| ||| |||||||| ||| ||||||| |||||||||||||||||||    
T  22198481 tgttaacaaaattttatattacagttatagcatatcaatgtgaaaattgtatgtaataccc 22198421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 19898827 - 19898878
Alignment:
Q  12 gaatgatgaaaacaactagttttatatataacatgttgaagatgtaacaaaa 63  Q
    ||||||| |||||| ||||||||||||||||||  ||||||| |||||||||    
T  19898827 gaatgataaaaacagctagttttatatataacacattgaagacgtaacaaaa 19898878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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