View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2606_low_7 (Length: 433)
Name: NF2606_low_7
Description: NF2606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2606_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 417
Target Start/End: Complemental strand, 48644854 - 48644438
Alignment:
| Q |
1 |
tttctaacacgtactgaacaatcatcgtatagaaacttgtgaacaatcctaagactctttgtcaaaacacattcctcccacgttttctccttaagcacca |
100 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
48644854 |
tttctaacacgcactgaacaatcatcgtatagaaacttgtgaacaatcctaagactctttgtcaaaacacaatcctcccaagttttctccttaagcacca |
48644755 |
T |
|
| Q |
101 |
cctccgtagcatcaagacggtgcatgttcctcttccacataccataaagcctatgaatcttttgaacttgtctatttgcaagcttaatattatttatttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48644754 |
cctccgtagcatcaagacggtgcatgttcctcttccacataccataaagcctatgaatcttttgaacttgtctatttgcaagcttaatattatttatttt |
48644655 |
T |
|
| Q |
201 |
aagagcatcaatagcaacttctagaagcttcttcatggttctttcatcaacttttccttctaactcagctctaaaaaattggtcaaattcaggtacacca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48644654 |
aagagcatcaatagcaacttctagaagcttcttcatggttctttcatcaacttttccttctaactcagctctaaaaaattggtcaaattcaggtacacca |
48644555 |
T |
|
| Q |
301 |
atggctcttcgtatccctcttgtataatcatgattttctttgttaaatatttcacgaacttcatcaacttgacctgcttcaatcatccgatccacacgtg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
48644554 |
atggctcttcgtatccctcttgtataatcatgattttctttgttaaatatttcacgaacttcgtcaacttgacctgcttcaatcatccgatccacacgtg |
48644455 |
T |
|
| Q |
401 |
tggataaagatgattgg |
417 |
Q |
| |
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| T |
48644454 |
tggataaagatgattgg |
48644438 |
T |
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Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 351 - 392
Target Start/End: Original strand, 7594406 - 7594447
Alignment:
| Q |
351 |
ttcacgaacttcatcaacttgacctgcttcaatcatccgatc |
392 |
Q |
| |
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| T |
7594406 |
ttcacgaacttcatcaacttgaccagcttcaatcatacgatc |
7594447 |
T |
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