View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2607_high_1 (Length: 357)
Name: NF2607_high_1
Description: NF2607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2607_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 349
Target Start/End: Original strand, 24514082 - 24514416
Alignment:
| Q |
18 |
gatattacctacaataataacccctaggggctcagccaagccagaaagagatgccaatttgaatgcttgccatttactatgacacatcacagaaataaaa |
117 |
Q |
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| T |
24514082 |
gatattacctacaataataacccctaggggctcagccaagccagaaagagatgccaatttgaatgcttgccatttactatgacacatcacagaaataaaa |
24514181 |
T |
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| Q |
118 |
tnnnnnnn-gttacaactcgagtaatataattggcaaatcttctnnnnnnn-tatcgtattttcaagaatttgatggcatatatattagcattgtnnnnn |
215 |
Q |
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| T |
24514182 |
taaaaaaaagttacaactcgagtaatataattggcaaatcttataaaaaaaatatcgtattttcaagaatttgatagcatatatattagcattgtaaaaa |
24514281 |
T |
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| Q |
216 |
nnnntt-ataccgatttctgataagaagccgtcaattttctatgtcacactatcaatttcgaaaatgaagtgatgtgccaaaataatggattctcgtgaa |
314 |
Q |
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|| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
24514282 |
aaaatttacaccgatttctgataagaagtcgtcaattttctatgtcacactatcaatttcgaaaatgaagtgatgtgcaaaaataatggattctcgtgaa |
24514381 |
T |
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| Q |
315 |
tatcaatgtaaaaccgttttaagtacatacccttt |
349 |
Q |
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|||||||||||||||||||||||||| |||||||| |
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| T |
24514382 |
tatcaatgtaaaaccgttttaagtacgtacccttt |
24514416 |
T |
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