View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2607_low_2 (Length: 265)

Name: NF2607_low_2
Description: NF2607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2607_low_2
NF2607_low_2
[»] chr7 (3 HSPs)
chr7 (175-248)||(5984469-5984542)
chr7 (1-54)||(5984291-5984344)
chr7 (181-248)||(20184738-20184805)
[»] chr3 (2 HSPs)
chr3 (163-248)||(47730261-47730346)
chr3 (163-229)||(12998024-12998090)
[»] chr2 (1 HSPs)
chr2 (163-210)||(9838389-9838436)
[»] chr6 (2 HSPs)
chr6 (163-248)||(12392634-12392719)
chr6 (168-248)||(35025524-35025604)
[»] chr4 (2 HSPs)
chr4 (163-207)||(8625077-8625121)
chr4 (163-248)||(22136711-22136796)
[»] chr8 (1 HSPs)
chr8 (1-50)||(8544781-8544830)


Alignment Details
Target: chr7 (Bit Score: 62; Significance: 7e-27; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 175 - 248
Target Start/End: Original strand, 5984469 - 5984542
Alignment:
Q  175 tgtgtttgacaagagtttgatcttgctcctacgtatcacccgatgcgatggagaattcaaaattacatagttct 248  Q
    |||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  5984469 tgtgtttgtcaagagtttgatcttgctcctacgtatcatccgatgcgatagagaattcaaaattacatagttct 5984542  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 5984291 - 5984344
Alignment:
Q  1 ttagcatcccacgacatccgttaaaaaacggttacctctaatcaattgtgaaag 54  Q
    ||||||||||| |||||||||||||||||||||||||||||| |||||||||||    
T  5984291 ttagcatcccatgacatccgttaaaaaacggttacctctaattaattgtgaaag 5984344  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 248
Target Start/End: Original strand, 20184738 - 20184805
Alignment:
Q  181 tgacaagagtttgatcttgctcctacgtatcacccgatgcgatggagaattcaaaattacatagttct 248  Q
    ||||||||||||||| |||||||||||||||  | | |||||||||||||||||| |||| |||||||    
T  20184738 tgacaagagtttgattttgctcctacgtatcttctggtgcgatggagaattcaaagttacgtagttct 20184805  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 163 - 248
Target Start/End: Complemental strand, 47730346 - 47730261
Alignment:
Q  163 ttttgttattactgtgtttgacaagagtttgatcttgctcctacgtatcacccgatgcgatggagaattcaaaattacatagttct 248  Q
    |||| |||||| |||| ||||||||||||| |||||||||||||||||| || | |||||||||||| |||||  ||| |||||||    
T  47730346 tttttttattattgtgcttgacaagagtttcatcttgctcctacgtatctccaggtgcgatggagaaatcaaagatacgtagttct 47730261  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 163 - 229
Target Start/End: Original strand, 12998024 - 12998090
Alignment:
Q  163 ttttgttattactgtgtttgacaagagtttgatcttgctcctacgtatcacccgatgcgatggagaa 229  Q
    |||| |||||| |||| ||||||||||||| |||||||||||||||||| || | ||||||||||||    
T  12998024 tttttttattattgtgcttgacaagagtttcatcttgctcctacgtatctccaggtgcgatggagaa 12998090  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 163 - 210
Target Start/End: Original strand, 9838389 - 9838436
Alignment:
Q  163 ttttgttattactgtgtttgacaagagtttgatcttgctcctacgtat 210  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  9838389 ttttgttattattgtgtttgacaagagttcgatcttgctcctacgtat 9838436  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 248
Target Start/End: Complemental strand, 12392719 - 12392634
Alignment:
Q  163 ttttgttattactgtgtttgacaagagtttgatcttgctcctacgtatcacccgatgcgatggagaattcaaaattacatagttct 248  Q
    |||| |||||| |||| ||||||||||||| ||||||||||||||||||  | | |||||||||||| |||||  ||| |||||||    
T  12392719 tttttttattattgtgcttgacaagagtttcatcttgctcctacgtatcttcaggtgcgatggagaaatcaaagctacgtagttct 12392634  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 168 - 248
Target Start/End: Complemental strand, 35025604 - 35025524
Alignment:
Q  168 ttattactgtgtttgacaagagtttgatcttgctcctacgtatcacccgatgcgatggagaattcaaaattacatagttct 248  Q
    |||||| |||| |||| |||||||| |||||||||||||||||| || | |||||||||||| |||||  ||| |||||||    
T  35025604 ttattattgtgcttgaaaagagtttcatcttgctcctacgtatctccaggtgcgatggagaaatcaaagctacgtagttct 35025524  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 8625077 - 8625121
Alignment:
Q  163 ttttgttattactgtgtttgacaagagtttgatcttgctcctacg 207  Q
    ||||||||||| |||||||||||||| ||||||||||||||||||    
T  8625077 ttttgttattattgtgtttgacaagaatttgatcttgctcctacg 8625121  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 163 - 248
Target Start/End: Original strand, 22136711 - 22136796
Alignment:
Q  163 ttttgttattactgtgtttgacaagagtttgatcttgctcctacgtatcacccgatgcgatggagaattcaaaattacatagttct 248  Q
    ||||||||||| ||||||||||||||||  ||||||||||| || |||| ||   ||||||||| ||||||||  ||| |||||||    
T  22136711 ttttgttattattgtgtttgacaagagtgagatcttgctccaacatatctcctagtgcgatggaaaattcaaagctacgtagttct 22136796  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 8544781 - 8544830
Alignment:
Q  1 ttagcatcccacgacatccgttaaaaaacggttacctctaatcaattgtg 50  Q
    ||||||||||||||||||| |||||||| ||| | ||||||| |||||||    
T  8544781 ttagcatcccacgacatccattaaaaaatggtcatctctaattaattgtg 8544830  T

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